Locus 174

Sequence ID X_DroMel_CAF1
Location 629,376 – 629,468
Length 92
Max. P 0.895657
window277

overview

Window 7

Location 629,376 – 629,468
Length 92
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 88.36
Mean single sequence MFE -27.84
Consensus MFE -22.02
Energy contribution -21.82
Covariance contribution -0.20
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.79
SVM decision value 0.99
SVM RNA-class probability 0.895657
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 629376 92 + 22224390
UCUUCUUUGUUGUUCAGACGAGAUAGGGCAGUAAACGAAUCGCGGCCAAAACUCAAGGGGCAAUUAAGCAUCCAUCCUGA--CUCUGAAGAAAU
..(((((((..((.(((..(((....(((.((.........)).)))....)))..(((((......)).)))...))))--)..))))))).. ( -21.10)
>DroSec_CAF1 2514 90 + 1
UCUUCUUUGUUGUCCAGACGAGAGAGGGCAGUGAAC--AUCGCGGCCAAAUCUCAAGGGGCAAUUAAGCAGCCAUCCUGG--AUCUGAAGAAAU
..((((((...((((((..((((...(((.(((...--..))).)))...))))..((.((......))..))...))))--))..)))))).. ( -31.40)
>DroSim_CAF1 2429 92 + 1
UCUUCUUUGUUGUCCAGACGAGAGAGGGCAGUGAACGAAUCGCGGCCAAAUCUCAAGGGGCAAUUAAGCAGCCAUCCUGG--AUCUGAAGAAAU
..((((((...((((((..((((...(((.((((.....)))).)))...))))..((.((......))..))...))))--))..)))))).. ( -32.00)
>DroEre_CAF1 4365 92 + 1
UCUGUUUGGUUGUUCAGAAGAGGGAAGGCAGUGAACAAAUCGCGGCCAAAACUCAAGGGGCAAUUAGGCAGCCAUCCUGG--AUCUGAAGAAUU
.((((((((((((((....(((....(((.((((.....)))).)))....)))...))))))))))))))((.....))--............ ( -28.50)
>DroYak_CAF1 2382 94 + 1
UCUGUUGAGUUGUUCAGACGAGAGAAGGCAGCGAACGAAUCGCGGCCAAGACUCAAGGGGCAAUUAAGCAGCCAUCCUGGAAAUCUGAAGAAAC
.(((((.((((((((....(((....(((.((((.....)))).)))....)))...)))))))).)))))((.....)).............. ( -26.20)
>consensus
UCUUCUUUGUUGUUCAGACGAGAGAGGGCAGUGAACGAAUCGCGGCCAAAACUCAAGGGGCAAUUAAGCAGCCAUCCUGG__AUCUGAAGAAAU
(((((........((((..(((....(((.((((.....)))).)))....)))..((.((......))..))...))))......)))))... (-22.02 = -21.82 +  -0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006