Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 629,376 – 629,468 |
Length | 92 |
Max. P | 0.895657 |
Location | 629,376 – 629,468 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 88.36 |
Mean single sequence MFE | -27.84 |
Consensus MFE | -22.02 |
Energy contribution | -21.82 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.95 |
Structure conservation index | 0.79 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895657 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 629376 92 + 22224390 UCUUCUUUGUUGUUCAGACGAGAUAGGGCAGUAAACGAAUCGCGGCCAAAACUCAAGGGGCAAUUAAGCAUCCAUCCUGA--CUCUGAAGAAAU ..(((((((..((.(((..(((....(((.((.........)).)))....)))..(((((......)).)))...))))--)..))))))).. ( -21.10) >DroSec_CAF1 2514 90 + 1 UCUUCUUUGUUGUCCAGACGAGAGAGGGCAGUGAAC--AUCGCGGCCAAAUCUCAAGGGGCAAUUAAGCAGCCAUCCUGG--AUCUGAAGAAAU ..((((((...((((((..((((...(((.(((...--..))).)))...))))..((.((......))..))...))))--))..)))))).. ( -31.40) >DroSim_CAF1 2429 92 + 1 UCUUCUUUGUUGUCCAGACGAGAGAGGGCAGUGAACGAAUCGCGGCCAAAUCUCAAGGGGCAAUUAAGCAGCCAUCCUGG--AUCUGAAGAAAU ..((((((...((((((..((((...(((.((((.....)))).)))...))))..((.((......))..))...))))--))..)))))).. ( -32.00) >DroEre_CAF1 4365 92 + 1 UCUGUUUGGUUGUUCAGAAGAGGGAAGGCAGUGAACAAAUCGCGGCCAAAACUCAAGGGGCAAUUAGGCAGCCAUCCUGG--AUCUGAAGAAUU .((((((((((((((....(((....(((.((((.....)))).)))....)))...))))))))))))))((.....))--............ ( -28.50) >DroYak_CAF1 2382 94 + 1 UCUGUUGAGUUGUUCAGACGAGAGAAGGCAGCGAACGAAUCGCGGCCAAGACUCAAGGGGCAAUUAAGCAGCCAUCCUGGAAAUCUGAAGAAAC .(((((.((((((((....(((....(((.((((.....)))).)))....)))...)))))))).)))))((.....)).............. ( -26.20) >consensus UCUUCUUUGUUGUUCAGACGAGAGAGGGCAGUGAACGAAUCGCGGCCAAAACUCAAGGGGCAAUUAAGCAGCCAUCCUGG__AUCUGAAGAAAU (((((........((((..(((....(((.((((.....)))).)))....)))..((.((......))..))...))))......)))))... (-22.02 = -21.82 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:06 2006