Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,830,599 – 4,830,716 |
Length | 117 |
Max. P | 0.974360 |
Location | 4,830,599 – 4,830,716 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 92.84 |
Mean single sequence MFE | -26.74 |
Consensus MFE | -21.82 |
Energy contribution | -22.86 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.15 |
Structure conservation index | 0.82 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4830599 117 + 22224390 CAAAAGGCAUUUUUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA-UGCACACUUACAGUUGUGGCCAAGAUGUUAGCAAUUUU .....((((((((..(((.............(((((......)))))..(((((.......)))))..)))((((((..-((........))...))))))))))))))......... ( -28.50) >DroSec_CAF1 36514 116 + 1 CAAAA-GCAUUUUUAUGCUAUAAUUUUCAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA-UGCACACUUACAGUUGUGGCCAAGAUGUUAGCAAUCUU ....(-(((((((..(((..((((((((.........))))))))....(((((.......)))))..)))((((((..-((........))...))))))))))))))......... ( -30.50) >DroSim_CAF1 36373 117 + 1 CAAAAGGCAUUUUUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA-UGCACACUUACAGUUGUGGCCAAGAUGCUAGCAAUCUU .....((((((((..(((.............(((((......)))))..(((((.......)))))..)))((((((..-((........))...))))))))))))))......... ( -31.00) >DroEre_CAF1 46501 116 + 1 CAAAAGGCAUUUAUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUACAAGUGCCGCAGAACGCAGGCCACUA-UGCACACGUACAGUUGUGGCCAAGAUGUUAAGA-UCUU .....(((((((......((......))...(((((......))))).......)))))))((.....)).((((((..-((........))...))))))(((((......)-)))) ( -24.30) >DroYak_CAF1 37935 118 + 1 CAAAAGGCAUUUAUAUGCUAUAAUUUUAAGAAUCAAAGAAAAUUGAUAAUCUACAAGUGCCGCAGAACGCCGUCCACUAUUGCACACUUACAAUCGUGGCCAAGACGUUAGUAGUUUC .....(((((((......((......))((((((((......)))))..)))..)))))))....((((.(..((((.((((........)))).))))....).))))......... ( -19.40) >consensus CAAAAGGCAUUUUUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA_UGCACACUUACAGUUGUGGCCAAGAUGUUAGCAAUCUU .....(((((((...(((.............(((((......)))))..(((((.......)))))..)))((((((...((........))...)))))).)))))))......... (-21.82 = -22.86 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:47 2006