Locus 1737

Sequence ID X_DroMel_CAF1
Location 4,828,306 – 4,828,401
Length 95
Max. P 0.981109
window2846

overview

Window 6

Location 4,828,306 – 4,828,401
Length 95
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 93.41
Mean single sequence MFE -30.76
Consensus MFE -28.68
Energy contribution -28.76
Covariance contribution 0.08
Combinations/Pair 1.04
Mean z-score -1.58
Structure conservation index 0.93
SVM decision value 1.88
SVM RNA-class probability 0.981109
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4828306 95 + 22224390
UACCGUCUGUCAGGCGCAGAUUGGUGCAGUUUGCCCCUGGCCACUGUAAUUUAACACCCACGCCAGCCUGUCAGGCA--GCUCGAUUCCCGCGAUUC
....(((((.(((((((((((((...))))))))...((((...(((......))).....))))))))).))))).--..(((.......)))... ( -31.00)
>DroSec_CAF1 34336 95 + 1
UCCCGUCUGUCAGGCGCAGAUUGGUGCAGUUUGCCCCUGGCCACUGUAAUUUAACACCCACGCCAGUCUGUCAGGCA--GCUCGAUUCCCGCGAUUC
....(((((.(((((((((((((...))))))))...((((...(((......))).....))))))))).))))).--..(((.......)))... ( -28.30)
>DroSim_CAF1 34182 95 + 1
UCCCGUCUGUCAGGCGCAGAUUGGUGCAGUUUGCCCCUGGCCACUGUAAUUUAACACCCACGCCAGCCUGUCAGGCA--GCUCGAUUCCCGCGAUGC
....(((((.(((((((((((((...))))))))...((((...(((......))).....))))))))).))))).--(((((.......))).)) ( -32.70)
>DroEre_CAF1 44267 93 + 1
UCCCGUCUGUCAGGCGCAGAUUGCUGCAGUUUGCCCAUGGCCUCUGUAAUUUAACACCCACGCCAGCCUGUCAGGCA--GCUCGAUUCCC--GAUCC
....(((((.(((((((((((((...))))))))...((((...(((......))).....))))))))).))))).--..(((.....)--))... ( -31.70)
>DroYak_CAF1 35671 95 + 1
UCCCGUCUGUCAGGCGCAGAUUGCUGCAGUUUGCCCCUGGCCUCUGUAAUUUUACACCCACGCCAGGCUGUCAGGCAGAGCUCAAUUCCC--GAUCC
....(((((.(((..((((((((...)))))))).((((((...((((....)))).....))))))))).)))))..............--..... ( -30.10)
>consensus
UCCCGUCUGUCAGGCGCAGAUUGGUGCAGUUUGCCCCUGGCCACUGUAAUUUAACACCCACGCCAGCCUGUCAGGCA__GCUCGAUUCCCGCGAUCC
....(((((.(((((((((((((...))))))))...((((...(((......))).....))))))))).)))))..................... (-28.68 = -28.76 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:46 2006