Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,824,565 – 4,824,675 |
Length | 110 |
Max. P | 0.653537 |
Location | 4,824,565 – 4,824,675 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.59 |
Mean single sequence MFE | -26.17 |
Consensus MFE | -20.68 |
Energy contribution | -20.52 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.79 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653537 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4824565 110 + 22224390 UCGUUCGUCGACUGUUUUUGGAUUUUAGCCAAAAGCCAAUGGCAC----AAUGAAAAAAGAAUAAUAAAAAAAAAAAAACAGCUCCUCUGCCUUGGCGCCAAAGUGGGUCACUC .........((((..((((((......(((((..(((...)))..----................................((......)).))))).))))))..)))).... ( -21.40) >DroSec_CAF1 30746 93 + 1 UCGUUGGUCGACUCUUUUUGGAUUUUAGCCAAAAGCCAAUGGCAC----AAACA-----------------GAAGAAAAAAGCGCCUCUGCCUUGGCGCCAAAGUGGGUCACUC .....(((.(((((.(((((.......((((........))))..----.....-----------------..........(((((........)))))))))).)))))))). ( -26.30) >DroSim_CAF1 30613 93 + 1 UCGUUGGCCGACUCUUUUUGGAUUUUAGCCAAAAGCCAAUGGCAC----AAAGA-----------------GAAGAAAAAAGCGCCUCUGCCUUGGCGCCAAAGUGGGUCACUC ....(((((.((((((((((.......((((........)))).)----)))))-----------------))........(((((........)))))....)).)))))... ( -29.50) >DroEre_CAF1 40509 83 + 1 UCGUUCCCCGGCUGUUUUUGGAUUUUAGCCAAAAGCCAAAGGCAA-------------------------------AAAAAGCGACUCUGCCUUGGCGCCAAAGUGGGUCACUC ..((..((((((...((((((.......))))))(((((.((((.-------------------------------............)))))))))))).....)))..)).. ( -25.42) >DroYak_CAF1 31880 97 + 1 UCGUUCGCCGACUGUUUUUGGAUUUCAGCCAAAAGCCAAAGGCAAAGGCAACAA-----------------CAAAAAAAAGGCGACUGUGCCUUGGCGCCAAAGUGGGUCACUC ..((..(((.(((((((((((.......))))))))....(((.((((((....-----------------........((....)).))))))...)))..))).))).)).. ( -28.22) >consensus UCGUUCGCCGACUGUUUUUGGAUUUUAGCCAAAAGCCAAUGGCAC____AAAGA_________________GAAAAAAAAAGCGCCUCUGCCUUGGCGCCAAAGUGGGUCACUC .........((((..((((((......(((((..(((...)))......................................((......)).))))).))))))..)))).... (-20.68 = -20.52 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:44 2006