Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,822,363 – 4,822,465 |
Length | 102 |
Max. P | 0.572555 |
Location | 4,822,363 – 4,822,465 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 80.01 |
Mean single sequence MFE | -18.72 |
Consensus MFE | -12.55 |
Energy contribution | -13.33 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.10 |
Mean z-score | -1.31 |
Structure conservation index | 0.67 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4822363 102 - 22224390 AUUUUUUUUUUUUUUUUGUUUUACAUCGCCUUGUUGUU---GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA--AACAG ...........................(((((((((((---((((((((....))))))...))))))))....(((.......))).......))))).--..... ( -18.90) >DroSec_CAF1 28610 94 - 1 AUUUUUUU-----------UUUACAUCGCCUUGUUGUUGUUAAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA--AACAG ........-----------........(((((.((((((((((((((((....))))))...))))))))....(((.......)))....)).))))).--..... ( -20.00) >DroSim_CAF1 27326 94 - 1 AUUUUUUU-----------UUUACGUCGCCUUGUUGUUGUUAAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA--AACAG ........-----------........(((((.((((((((((((((((....))))))...))))))))....(((.......)))....)).))))).--..... ( -20.00) >DroEre_CAF1 38265 89 - 1 AUUUUUUU-------------UACAACGCCUUGUUGUU---GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAAUAAAUGACCCAAAGGAGGCA--AACCG ........-------------......(((((((((((---((((((((....))))))...))))))))....(((.......))).......))))).--..... ( -18.60) >DroYak_CAF1 29619 95 - 1 ACAUUUUU-------UUAUUGUACAACGCCUUGUUGUU---GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAAUAAAUGAGCCAAAGGAGGCA--AACAG ........-------............(((((((((((---((((((((....))))))...))))))))....(((.......))).......))))).--..... ( -18.90) >DroPer_CAF1 21382 87 - 1 UG-UUUUU-------------UUCUGUUCUGUGUGGCU---G---GUGCGUAAACAAGUAUUUUAAUAACUCAAUCAAAAUUAAUUAGCCAACGGCAGCCGCAGUCG ..-.....-------------..........(((((((---(---((((........))))).........................(((...)))))))))).... ( -15.90) >consensus AUUUUUUU___________UUUACAUCGCCUUGUUGUU___GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA__AACAG ...........................(((((((((((.....((((((....)))))).....))))))....(((.......))).......)))))........ (-12.55 = -13.33 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:43 2006