Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,821,649 – 4,821,742 |
Length | 93 |
Max. P | 0.647674 |
Location | 4,821,649 – 4,821,742 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 84.50 |
Mean single sequence MFE | -21.98 |
Consensus MFE | -17.73 |
Energy contribution | -17.85 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.57 |
Structure conservation index | 0.81 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647674 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4821649 93 - 22224390 CCCCCAGACCCCAGAGCCACGAUUCUUACAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAU------------ ....(((......(((((..............((((((...))))))....(((((....))))))))))..........((....)))))..------------ ( -20.60) >DroSec_CAF1 27894 95 - 1 CCC----------GAGCCACGAUUCUUGCAAAGCCCAUCGAAUGGGCCUCUCGCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAUAGAUUCACGACU ...----------(((((....(..(((((((((((((...)))))).......)))))))..).)))))........((((.(((....))).))))....... ( -23.61) >DroSim_CAF1 26599 95 - 1 CCC----------GAGCCACGAUUCUCGCAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAUAGAUUCACGACU ..(----------(.....(((((...(((((((((((...)))))).......))))).....(((((....)))))....)))))..(((.....)))))... ( -21.81) >DroEre_CAF1 37509 95 - 1 UGC----------AAACCACGAUUCUAACAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGGUAGAUUCACGACU ...----------.......((.((((.....((((((...))))))..(((((((....))))))).........(((.((....)).))))))).))...... ( -21.90) >consensus CCC__________GAGCCACGAUUCUUACAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAUAGAUUCACGACU .............(((((..............((((((...))))))....(((((....)))))))))).........((((......))))............ (-17.73 = -17.85 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:42 2006