Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,817,160 – 4,817,254 |
Length | 94 |
Max. P | 0.949532 |
Location | 4,817,160 – 4,817,254 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 82.55 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -19.78 |
Energy contribution | -20.38 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.68 |
Structure conservation index | 0.62 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4817160 94 - 22224390 CAGCUGCUCCACAUGCAACAUUCACUGUGCAC-----A------CAUCUCGCCUUAAUAGAGAUGUGUAGCAUGUGGCCCUCGUGCGUGUUGCGUG------UCCCCUUAA ..........(((((((((((.(((.((((((-----(------((((((.........))))))))).)))))))((......))))))))))))------)........ ( -35.80) >DroSec_CAF1 23639 96 - 1 CAGCUGCUCCACAUGCAACAUUCACUGUGCAC------------UGUGUCUCCUUAAUAGAGAUGUGUAGCAUGUGGGCCUCGUGCGUGUUGCGUGUUG---UCCCCUUAA ..........(((((((((((.(((.((.(((------------((((((((.......))))).....))).))).))...))).)))))))))))..---......... ( -28.70) >DroSim_CAF1 22337 96 - 1 CAGCUGCUCCACAUGCAACAUUCACUGUGCAC------------UGUGUCUCCUUAAUAGAGAUGUGUAGCAUGUGGGCCUCGUGCGUGUUGCGUGUUG---UCCCCUUAA ..........(((((((((((.(((.((.(((------------((((((((.......))))).....))).))).))...))).)))))))))))..---......... ( -28.70) >DroEre_CAF1 33137 90 - 1 CAGCUGCUCCACAUGCAACAUUCACUGCACUG----------------UCUCCUUAAUAGAGAUGUGUAGCAUGUACGCCUCGUGCGUGUUGCGUGUCCC-----CCUUAA ..........(((((((((((...((((((.(----------------((((.......)))))))))))...(((((...))))))))))))))))...-----...... ( -30.30) >DroYak_CAF1 24254 111 - 1 CAGCUGCUCCACAUGCAACAUUCACUGCACUCCCCACACUCCCCACUCACUCCUUAAUAGAGAUGUGCAGCAUGUGGGCCUCGUGCGUGUUGCGUGUCCCCAGCCCGUUAA ..((((....(((((((((((.....((((..((((((..(..(((...(((.......)))..)))..)..))))))....)))))))))))))))...))))....... ( -37.20) >consensus CAGCUGCUCCACAUGCAACAUUCACUGUGCAC____________UGUCUCUCCUUAAUAGAGAUGUGUAGCAUGUGGGCCUCGUGCGUGUUGCGUGUCC___UCCCCUUAA ..........(((((((((((...........................((((.......))))......(((((.......)))))))))))))))).............. (-19.78 = -20.38 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:42 2006