Locus 173

Sequence ID X_DroMel_CAF1
Location 625,526 – 625,631
Length 105
Max. P 0.564241
window276

overview

Window 6

Location 625,526 – 625,631
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 95.87
Mean single sequence MFE -30.52
Consensus MFE -27.78
Energy contribution -27.78
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.91
SVM decision value 0.06
SVM RNA-class probability 0.564241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 625526 105 + 22224390
CAGAGACCCGCUCGAUCAGCAAACAAAAACAUAGAACCCAGUGUGGAAUGAGUGGGUAAACAAAAGAGGCUGCCUCUUAUUCGAGAGCGGCGGUGGAAGACCGAG
.....(((((((((.((.(((....................))).)).)))))))))...........((((((((......))).)))))(((.....)))... ( -31.05)
>DroSec_CAF1 10038 105 + 1
CAGACACCCGCUCGAGCAGCAAACAAAAACAUAGAACCCAAUGUGGAAUGAGUGGGUAAACAAAAGAGGCUGCCUCUUCUUCGAGAGCGGCGGGGGAAGACCAAG
.....(((((((((..(.(((....................))).)..)))))))))...........((((((((......))).))))).((......))... ( -28.95)
>DroSim_CAF1 4286 105 + 1
CAGAGACCCGCUCGAGCAGCAAACAAAAACAUAGAACCCAAUGUGGAAUGAGUGGGUAAACAAAAGAGGCUGCCUCUUCUUCGAGAGCGGCGGCGGAAGACCAAG
.....(((((((((..(.(((....................))).)..)))))))))...........((((((((......))).)))))(((....).))... ( -31.55)
>consensus
CAGAGACCCGCUCGAGCAGCAAACAAAAACAUAGAACCCAAUGUGGAAUGAGUGGGUAAACAAAAGAGGCUGCCUCUUCUUCGAGAGCGGCGGCGGAAGACCAAG
.....(((((((((..(.(((....................))).)..)))))))))...........((((((((......))).)))))((.......))... (-27.78 = -27.78 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:05 2006