Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,813,334 – 4,813,435 |
Length | 101 |
Max. P | 0.995768 |
Location | 4,813,334 – 4,813,435 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 76.10 |
Mean single sequence MFE | -27.50 |
Consensus MFE | -16.64 |
Energy contribution | -19.94 |
Covariance contribution | 3.30 |
Combinations/Pair | 1.15 |
Mean z-score | -2.56 |
Structure conservation index | 0.61 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995768 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4813334 101 + 22224390 CUGCUCCACAUUUCCACGGAAAUUCCCAUGUCCGUUAACUUGCUGAAUAAGUUGGUGGAACAUAUAUAUA---UAUAUAGUGUUUUAUAGGGGGGAACAGCAUC (((.(((..(((((....)))))(((((((((((..((((((.....))))))..))).)))).......---..(((((....)))))))))))).))).... ( -27.10) >DroSec_CAF1 19929 87 + 1 CUGCUCCACCUUUCCACGGAAAUUCCCAUGUCCGUUA------------AGUUGGAGGAACAUAUAUAUA---UAUAUAG-GUUUUAUAGGG-GGAGCAGCAUC (((((((...((((....))))..(((...((((...------------...))))(((((.(((((...---.))))).-)))))...)))-))))))).... ( -27.20) >DroSim_CAF1 18613 94 + 1 CUGCUCCACCUUUCCACGGAAAUUCCCAUGUCCGUUAACUUACUGAAUAAGUUGGUGGAACAUGUGUAUA---U-----G-GUUUUAUAGGG-GGAGCAGCAUC (((((((.((((.(((.((.....))((((((((..((((((.....))))))..))).)))))......---)-----)-)......))))-))))))).... ( -34.10) >DroEre_CAF1 29345 94 + 1 CUGCUCCACCUUUCCUCGGAAAUUCCCAUGUCCGUUAACUUGCUGAAUAAGUUUAUGGAACAAAAAUAGA-------U-G-GUUUUAUAGGG-GGAGCAGCAUC (((((((...((((....))))..(((.(((((((.((((((.....)))))).)))).)))...(((((-------.-.-..))))).)))-))))))).... ( -29.60) >DroYak_CAF1 20372 87 + 1 --------------CUCGGAAAUUCCCAUGUCCGUUAGCUUGCUGAAUAAGUUCACGGAACAGAUAUAGUUUAUAUGU-A-GUUUAAAAGGG-GGAACAGCAUC --------------........(((((.(((((((.((((((.....)))))).)))).))).(((((.....)))))-.-..........)-))))....... ( -19.50) >consensus CUGCUCCACCUUUCCACGGAAAUUCCCAUGUCCGUUAACUUGCUGAAUAAGUUGGUGGAACAUAUAUAUA___UAU_U_G_GUUUUAUAGGG_GGAGCAGCAUC (((((((.((((.....((......)).((((((((((((((.....))))))))))).)))..........................)))).))))))).... (-16.64 = -19.94 + 3.30)
Location | 4,813,334 – 4,813,435 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.10 |
Mean single sequence MFE | -23.46 |
Consensus MFE | -12.05 |
Energy contribution | -15.18 |
Covariance contribution | 3.13 |
Combinations/Pair | 1.04 |
Mean z-score | -1.81 |
Structure conservation index | 0.51 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4813334 101 - 22224390 GAUGCUGUUCCCCCCUAUAAAACACUAUAUA---UAUAUAUAUGUUCCACCAACUUAUUCAGCAAGUUAACGGACAUGGGAAUUUCCGUGGAAAUGUGGAGCAG ....(((((((..(((((...(((.(((((.---...))))))))(((...(((((.......)))))...))).))))).(((((....)))))..))))))) ( -22.20) >DroSec_CAF1 19929 87 - 1 GAUGCUGCUCC-CCCUAUAAAAC-CUAUAUA---UAUAUAUAUGUUCCUCCAACU------------UAACGGACAUGGGAAUUUCCGUGGAAAGGUGGAGCAG ....(((((((-.(((....(((-.(((((.---...))))).)))..(((....------------....)))((((((....))))))...))).))))))) ( -25.50) >DroSim_CAF1 18613 94 - 1 GAUGCUGCUCC-CCCUAUAAAAC-C-----A---UAUACACAUGUUCCACCAACUUAUUCAGUAAGUUAACGGACAUGGGAAUUUCCGUGGAAAGGUGGAGCAG ....(((((((-.(((......(-(-----(---(.....(((((((....(((((((...)))))))...)))))))((.....))))))..))).))))))) ( -31.00) >DroEre_CAF1 29345 94 - 1 GAUGCUGCUCC-CCCUAUAAAAC-C-A-------UCUAUUUUUGUUCCAUAAACUUAUUCAGCAAGUUAACGGACAUGGGAAUUUCCGAGGAAAGGUGGAGCAG ....(((((((-.(((.(((((.-.-.-------.....)))))((((...(((((.......)))))..((((.((....)).)))).))))))).))))))) ( -25.40) >DroYak_CAF1 20372 87 - 1 GAUGCUGUUCC-CCCUUUUAAAC-U-ACAUAUAAACUAUAUCUGUUCCGUGAACUUAUUCAGCAAGCUAACGGACAUGGGAAUUUCCGAG-------------- ((....(((((-(..........-.-(((.(((.....))).)))(((((...(((.......)))...)))))...)))))).))....-------------- ( -13.20) >consensus GAUGCUGCUCC_CCCUAUAAAAC_C_A_AUA___UAUAUAUAUGUUCCACCAACUUAUUCAGCAAGUUAACGGACAUGGGAAUUUCCGUGGAAAGGUGGAGCAG ....(((((((.((...............................(((...(((((.......)))))...)))((((((....))))))....)).))))))) (-12.05 = -15.18 + 3.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:38 2006