Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,811,238 – 4,811,331 |
Length | 93 |
Max. P | 0.510069 |
Location | 4,811,238 – 4,811,331 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 84.42 |
Mean single sequence MFE | -16.49 |
Consensus MFE | -11.68 |
Energy contribution | -11.68 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.57 |
Structure conservation index | 0.71 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.510069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4811238 93 - 22224390 UGAUCGGCGCAGAAGUAAGUGAGAUCGGGU--------AGAAGUUGAGAAGAAAAAAAAAACGUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU .((((..(((........))).))))....--------...((((((..............(.....)........(((.(((....))).))).)))))) ( -16.30) >DroSec_CAF1 18134 86 - 1 UGAUCGGCGCACAAGUUAGUGAGAUCGGGG--------AGAAGUUGAGAAAACA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU ((((((.(((.....(((((.(.(((....--------...(((((......))-------)))........)))...).)))))...))).))))))... ( -19.76) >DroSim_CAF1 16550 86 - 1 UGAUCGGCGCACAAGUAAGUGAGAUCGGGG--------AGAAGUUGAGAAAAAA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU .((((..(((........))).))))....--------...((((........)-------)))........(((.(((.(((....))).)))))).... ( -16.20) >DroEre_CAF1 27210 83 - 1 UGAUCAGUGAAGAAGUAAGUGAGAUCGGG---------AGAAG--GAGAAAAAA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGGCGAUCAACU (((((...................((...---------.))..--.........-------................((.(((....))).)))))))... ( -12.20) >DroYak_CAF1 18177 92 - 1 UGAUCAGUGAAGAAGUAAGUGAGAUCGGCGAAGGCCAAGGAGA--GAGAAAAAA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU ...(((.(.........).)))(((((((....))).......--.........-------................((.(((....))).)))))).... ( -18.00) >consensus UGAUCGGCGCAGAAGUAAGUGAGAUCGGGG________AGAAGUUGAGAAAAAA_______ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU .((((..(((........))).))))..............................................(((.(((.(((....))).)))))).... (-11.68 = -11.68 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:36 2006