Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,803,954 – 4,804,047 |
Length | 93 |
Max. P | 0.983506 |
Location | 4,803,954 – 4,804,047 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 96.66 |
Mean single sequence MFE | -22.51 |
Consensus MFE | -22.30 |
Energy contribution | -22.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.99 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4803954 93 + 22224390 C----CAAUCCUUGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC .----..........................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.30) >DroSec_CAF1 11106 97 + 1 CCGUCCAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC ..(((.................)))......((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.83) >DroSim_CAF1 11040 97 + 1 CCGUCCAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC ..(((.................)))......((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.83) >DroEre_CAF1 17263 93 + 1 C----CGAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC .----..........................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.30) >DroYak_CAF1 11106 93 + 1 C----CAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC .----..........................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.30) >consensus C____CAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC ...............................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) (-22.30 = -22.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:35 2006