Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,801,581 – 4,801,686 |
Length | 105 |
Max. P | 0.558387 |
Location | 4,801,581 – 4,801,686 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.91 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -22.18 |
Energy contribution | -25.30 |
Covariance contribution | 3.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.64 |
Structure conservation index | 0.74 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558387 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4801581 105 + 22224390 AGUUUCGUUGGUCACCUAACGGUUGUUUUCCAAAAGGCUGACGUCAAUAAAUGCUGCAGCCCAAAAGUAUGCUAUGCUUUUCUGUGAGUUAA------------ACAGUAGCUUUUU (((..(.((((.((((....)).))....))))..(((((.((.((.....)).))))))).....)...)))..(((...((((.......------------)))).)))..... ( -22.20) >DroSec_CAF1 8786 117 + 1 AGUUGCGUUAGUCUCCUAACGGUUGUUUUCCAAAAAGCUGACGGCCAUUUAUGCCGCAGCCCAAAAGUAUGCAAUGCUUUUUAGCCAUUAAAGAAGACGACAUGAAAGUAGCUUUUU (((((((((((....))))).(((((((((......((((.((((.......))))))))..((((((((...))))))))...........)))))))))......)))))).... ( -35.20) >DroSim_CAF1 8684 117 + 1 AGUUGCGUUGGUCUCCUAACGGUUGUUUUCCAAAAAGCUGACGGCCAUUAAUGUCGCAGCCCAAAAGUAUGCAAUGCUUUUUAGCGAUUAAAGAAGACGACAUGAAAGUAGCUUUUU (((((((((((....))))).(((((((((......((((.((((.......))))))))..((((((((...))))))))...........)))))))))......)))))).... ( -32.20) >consensus AGUUGCGUUGGUCUCCUAACGGUUGUUUUCCAAAAAGCUGACGGCCAUUAAUGCCGCAGCCCAAAAGUAUGCAAUGCUUUUUAGCGAUUAAAGAAGACGACAUGAAAGUAGCUUUUU (((((((((((....))))).(((((((((......((((.((((.......))))))))..((((((((...))))))))...........)))))))))......)))))).... (-22.18 = -25.30 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:34 2006