Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,801,298 – 4,801,395 |
Length | 97 |
Max. P | 0.959899 |
Location | 4,801,298 – 4,801,395 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.40 |
Mean single sequence MFE | -32.86 |
Consensus MFE | -22.03 |
Energy contribution | -22.95 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.22 |
Mean z-score | -1.76 |
Structure conservation index | 0.67 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.959899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4801298 97 + 22224390 ----------------------CUAGGGAUGGGCGAUUCAAAUAAGUGCCCGGAGCUUUCGUGACUAUCGUGCAAAG-CUCGUGACACGACCGGCGAAACAGCGAGAUUGGCCAUCUCUA ----------------------.(((((((((.((((((......(((..(((((((((((((.....)))).))))-))).)).))).....((......)))).)))).))))))))) ( -32.80) >DroSec_CAF1 8504 97 + 1 ----------------------CUAGGGAUGGUCGAUUCAAAUAAGUGCCAGGAGCUUUCGUGCUUAACGGACAAAG-UUCGUGACACGACCGGAAAAACAGCGAGAUUGGCCAUCUCUA ----------------------.((((((((((((((((......(((.((.(((((((.((.(.....).))))))-))).)).)))....(......)...)).)))))))))))))) ( -34.80) >DroSim_CAF1 8402 97 + 1 ----------------------CUAGGGAUGGGCGAUUCAAAUAAGUGCCAGGAGCUUUCGUGCCUAACGGACAAAG-UUCGUGACACGACCGGAGAAACAGCGAGAUUUGCCAUCUCUA ----------------------.(((((((((.(((.((......(((.((.(((((((.((.((....))))))))-))).)).)))....(......).....)).)))))))))))) ( -33.80) >DroEre_CAF1 14541 118 + 1 GAUCGCUGUAAUUAACGCCUGCUUAGGGGUGGGCCAUUCAAAUAA-UACUCGGAGCUUUCGUGUCUAUCGCGUUAAA-UUCGUGACACGACCACAAGAACAGCACGAUUGCCCAUCUCUA ....((.((.......))..)).(((((((((((.(((.....))-)..(((..((((((.(((...(((.((((..-....)))).)))..))).))).))).)))..))))))))))) ( -29.50) >DroYak_CAF1 8450 118 + 1 GAUCGCUUAAACUAAACCUUACUUAAGGAUGGGCGAUUCAAAUGA--ACGGGGAGCUUUCGUGUCUAUCGGAUUAAAGCUCGUGACACGUCCACAAGAACAGCGCGAUCGCCCAUCUCUA .........................(((((((((((((....((.--.....(((((((...(((.....))).)))))))(((.......))).....))....))))))))))).)). ( -33.40) >consensus ______________________CUAGGGAUGGGCGAUUCAAAUAAGUGCCAGGAGCUUUCGUGCCUAUCGGACAAAG_UUCGUGACACGACCGGAAAAACAGCGAGAUUGGCCAUCUCUA .......................(((((((((((((((.............((.....(((((.(...((((......)))).).))))))).............))))))))))))))) (-22.03 = -22.95 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:33 2006