Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,799,390 – 4,799,481 |
Length | 91 |
Max. P | 0.638003 |
Location | 4,799,390 – 4,799,481 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.23 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -20.49 |
Energy contribution | -20.33 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.36 |
Mean z-score | -1.57 |
Structure conservation index | 0.73 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.638003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4799390 91 - 22224390 CUGAUCCUCAUCCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU .(((((..((..........))..)))))......((..(((((((((((((((....))).))))))).....)))))..))........ ( -25.90) >DroSec_CAF1 6691 91 - 1 CUGAUCCUCAACCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAAAGAAGCUCGUAUGGGCAAGGUUCCCAUU .(((((..(((........)))..)))))......((..(((((((((((.(((....)))..)))))).....)))))..))........ ( -22.70) >DroSim_CAF1 6565 91 - 1 CUGAUCCUCAACCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU .(((((..(((........)))..)))))......((..(((((((((((((((....))).))))))).....)))))..))........ ( -26.80) >DroEre_CAF1 12715 88 - 1 GUGCU---GCUCCUCAUCCUUGUCGAUCAUUAAAUCUGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCACGUAUGGGCAAGGUUCCCAUU .....---.........((((((((((......)))(((((...((((((((((....))).))))))))))))..)))))))........ ( -28.10) >DroYak_CAF1 6576 88 - 1 GUGGU---GCUCCUCAUCCUUGUCGGUCAUUACAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU (.((.---...)).)..(((((((((.........)).((((.(((((((((((....))).)))))))).).))))))))))........ ( -29.20) >DroAna_CAF1 7026 91 - 1 CUGGCUACCUUUCGCACUGACAUGGUCCAGCAAGUCCUGGUCCAGCUCCUCGGCCUUGGCCAAGGAGGCUCGUAUCGGGAGUGUUCCCAUU .(((..((((..((...((((.(((.((((......)))).))).(((((.(((....))).)))))).)))...))..)).))..))).. ( -34.70) >consensus CUGAUCCUCAUCCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU .................((((((((((......)))..((((.(((((((((((....))).)))))))).).))))))))))........ (-20.49 = -20.33 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:31 2006