Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,790,322 – 4,790,426 |
Length | 104 |
Max. P | 0.776267 |
Location | 4,790,322 – 4,790,426 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 74.27 |
Mean single sequence MFE | -16.79 |
Consensus MFE | -11.65 |
Energy contribution | -11.09 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.33 |
Mean z-score | -1.56 |
Structure conservation index | 0.69 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776267 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4790322 104 + 22224390 AUUUUAUGCAAGCCAAGCCUUUAUCAUUUGAUUUCAAAUCGAUAACAUGUUACAAAAGAUAUGGACCAUAGUUAAUCUACAAUUAUCGAUGGUUUGCAGUAAUA ......(((((((((...........((((....))))(((((((((((((......)))))).....(((.....)))...))))))))))))))))...... ( -24.40) >DroSec_CAF1 36129 89 + 1 AUUUUAUGCAAGCCAUGCUAUUAUCUUAUGAUUUCAAAUCGAUAACAUAUUACAAAA--------------UUAAACUACAAUUAUCGAUGGUUUGCAGUG-UA ......((((((((.((..(((((...)))))..)).((((((((............--------------...........))))))))))))))))...-.. ( -17.30) >DroSim_CAF1 22579 89 + 1 AUUUUAUGCAAGCUAUGCUAUUAUCUUAUGAUUUCAAAUCGAUAACAUGUUACAAAA--------------UUAAUCUACAAUUAUCGAUGGUUUGCAGUG-UA ......((((((((.((..(((((...)))))..)).((((((((..(((.......--------------.......))).))))))))))))))))...-.. ( -16.74) >DroYak_CAF1 19827 82 + 1 AUUUUAGGAAAAUCAUGCUCUUAUCUU-UGAUUUCAAAUCGAUAGCUUUCUUAG--------------------AGAUACAUUUAUUGGUUGUUUGCAUUG-CA .((((((((((.....(((...(((((-((....))))..))))))))))))))--------------------)).........................-.. ( -8.70) >consensus AUUUUAUGCAAGCCAUGCUAUUAUCUUAUGAUUUCAAAUCGAUAACAUGUUACAAAA______________UUAAUCUACAAUUAUCGAUGGUUUGCAGUG_UA .......(((((((........(((....))).....((((((((.....................................)))))))))))))))....... (-11.65 = -11.09 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:26 2006