Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,779,553 – 4,779,661 |
Length | 108 |
Max. P | 0.658678 |
Location | 4,779,553 – 4,779,661 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.99 |
Mean single sequence MFE | -28.10 |
Consensus MFE | -22.46 |
Energy contribution | -22.80 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.09 |
Mean z-score | -1.92 |
Structure conservation index | 0.80 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658678 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4779553 108 + 22224390 CCAACUGACGAAACUGACGAAAAUCGACUAGAGGUGGUGGAGA---------AACAUCGAUGCCAAACAUCGAUAUUUUCGAAAAAUCACAUAAAUUGGUG---UUUUUUGAUGAAUCAU .(((..(((........((.....))(((((..(((((...((---------((.(((((((.....)))))))..)))).....))))).....))))))---))..)))......... ( -20.00) >DroSec_CAF1 18553 117 + 1 CCAACUGGCGAAACUGACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUG---UUUUUCGAGGAAUCAU (((.(((((((............))).))))...)))........((((.((...(((((((.....)))))))....((((((((.(((........)))---)))))))))).)))). ( -31.00) >DroSim_CAF1 13355 120 + 1 CCAACUGGCGAAUCUGACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUGUUUUUUCGAGGAAUCAU (((.(((((((.((....))...))).))))...)))........((((.((...(((((((.....)))))))....((((((((..((((((....)))))))))))))))).)))). ( -33.30) >consensus CCAACUGGCGAAACUGACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUG___UUUUUCGAGGAAUCAU (((.(((((((............))).))))...))).((...............(((((((.....))))))).(((((((((((.(((........)))...))))))))))).)).. (-22.46 = -22.80 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:17 2006