Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,779,358 – 4,779,478 |
Length | 120 |
Max. P | 0.535627 |
Location | 4,779,358 – 4,779,478 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.56 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -15.54 |
Energy contribution | -15.77 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.22 |
Mean z-score | -1.98 |
Structure conservation index | 0.69 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4779358 120 - 22224390 AGUGAUUUAAAUUGUUGCUAAGUAAAUAGCAACAAAAAUGUCGGUUUAUCUGAGGUAAAUUUAAAUGAAUUCGUGGCAUAACUUACUAAUAAUAGAAAAGAGGCAAAACUUACACGCAUU ..(.((((((((((((((((......)))))))....((.((((.....)))).)).))))))))).)...((((..........(((....)))....(((......))).)))).... ( -22.50) >DroSec_CAF1 18353 120 - 1 AGUGAAAUAAAUUAUUGCUAAUAAAAUAGCAAUAAAAGUGUCUGUUCAUUCAAGGUAAAUUUAAUUAAAUUCAUGCCAUAACGUGUUAAUAUUACAAAAGAAGCAGAAUUUAGACGCAUU ...........(((((((((......)))))))))..(((((((...((((..(((((((((....)))))..)))).....(((.......)))..........)))).)))))))... ( -24.40) >DroSim_CAF1 13155 120 - 1 AGUGAAAUAAAUUGUUGCUAAUAAAAUAGCAAUAAAAGUGUCUGUUCAUUUAAGGUAAAUAUAAUUAAAUUCAUGCCAUAACGUGUUAAUAUUAGAAAAGAAGCAGAAUUUAGACGCAUU ...........(((((((((......)))))))))..((((((((((......((((...((......))...))))......((((..............))))))))..))))))... ( -20.84) >consensus AGUGAAAUAAAUUGUUGCUAAUAAAAUAGCAAUAAAAGUGUCUGUUCAUUUAAGGUAAAUUUAAUUAAAUUCAUGCCAUAACGUGUUAAUAUUAGAAAAGAAGCAGAAUUUAGACGCAUU ...........(((((((((......)))))))))..((((((((((......(((((((((....)))))..))))......((((..............))))))))..))))))... (-15.54 = -15.77 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:16 2006