Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,778,972 – 4,779,082 |
Length | 110 |
Max. P | 0.927054 |
Location | 4,778,972 – 4,779,082 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.94 |
Mean single sequence MFE | -25.90 |
Consensus MFE | -18.33 |
Energy contribution | -18.67 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.927054 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4778972 110 + 22224390 ACGAAAAUCGACUAGAGGUGGUGGAGA---------AACAUCGAUGCCAAACAUCGAUAUUUUCGAAAAAUCACAUAAAUUGGUGU-UUUUUGAUGAAUCAUUUUAUUCAAAUUUUUGAU .(((((((......((((((((.....---------...(((((((.....)))))))....((((((((.(((........))))-)))))))...))))))))......))))))).. ( -23.70) >DroSec_CAF1 15962 114 + 1 ACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU-UUUUCGAGGAAUCAUCGUAU--AAAUUGUA--- ((((...((.((.....)).)).......((((.((...(((((((.....)))))))....((((((((.(((........))))-))))))))).))))))))..--........--- ( -29.20) >DroSim_CAF1 12767 115 + 1 ACGAAAAUCAACUAGAGGUGGGAAAACAGCGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUUUUUUCGAGCAAUCAUCGUAU--AAAUUGUA--- ((((............(.((......)).)(((((....(((((((.....)))))))....((((((((..((........))..)))))))))).))).))))..--........--- ( -24.80) >consensus ACGAAAAUCGACUAGAGGUGGAGAAAAA__GAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU_UUUUCGAGGAAUCAUCGUAU__AAAUUGUA___ ................(((((..................(((((((.....))))))).((((((((((..(((........)))..)))))))))).)))))................. (-18.33 = -18.67 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:15 2006