Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,776,454 – 4,776,562 |
Length | 108 |
Max. P | 0.757141 |
Location | 4,776,454 – 4,776,562 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.15 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -15.12 |
Energy contribution | -17.40 |
Covariance contribution | 2.28 |
Combinations/Pair | 1.03 |
Mean z-score | -2.09 |
Structure conservation index | 0.58 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.757141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4776454 108 + 22224390 GGUGGUGGAGA---------AACAUCGAUGCCAAACAUCGAUAUUUUCAAAAAAUCACAAACAUCGGUG---UUUUUCGAUGAAUCAUCGUUUAAAUUGUAGGUACAAAUUAAUUUUCCA .....((((((---------(.((((((....((((((((((.(((............))).)))))))---))).)))))).........((((.((((....)))).))))))))))) ( -24.50) >DroSec_CAF1 12984 104 + 1 GGUGGGAAAACAGCGAUGCCAACA-------------UCGAUAUUUUCGAAGAAUCACAAACAUCGGUG---UUUUUCGAGGAAUCAUCGUAUAAAUUGUAGGUACAAAUUAAUUUUGCA (((((........(((((....))-------------)))...(((((((((((.(((........)))---))))))))))).)))))(((.((((((...........))))))))). ( -23.30) >DroSim_CAF1 11285 120 + 1 GGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUGUUUUUUCGAGGAAUCAUCGUAUAAAUUGUAAGUACAAAUUAAUUUUGCA .(..(((.......((((.....(((((((.....))))))).(((((((((((..((((((....)))))))))))))))))..))))...(((.((((....)))).))).)))..). ( -30.40) >consensus GGUGGAGAAAAA__GAUGCCAACAUCGAUG_CAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUG___UUUUUCGAGGAAUCAUCGUAUAAAUUGUAGGUACAAAUUAAUUUUGCA (((((..................(((((((.....))))))).(((((((((((.(((........)))...))))))))))).)))))...(((.((((....)))).)))........ (-15.12 = -17.40 + 2.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:12 2006