Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,775,407 – 4,775,507 |
Length | 100 |
Max. P | 0.602335 |
Location | 4,775,407 – 4,775,507 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 74.84 |
Mean single sequence MFE | -21.67 |
Consensus MFE | -12.35 |
Energy contribution | -14.13 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.05 |
Mean z-score | -1.74 |
Structure conservation index | 0.57 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4775407 100 + 22224390 ----GCUGAACAGCUGUUGGAA--GUGUUGAAAAGCGCCCAAACUGACAACAUGUAAAUGCACUUAUGCAUAUAUGCAUAUGUAUGCUUCAAGUUCACAAACCAAA ----..(((((.(.(((..(..--(((((....))))).....)..))).).((...(((((..((((((....)))))))))))....)).)))))......... ( -22.90) >DroSec_CAF1 11989 102 + 1 ----GCUGAACAGCUGUUGGAACAGUGUUGAAAAGCGCUCAAACUGACAACAUGUUAUUGCAUUUAUGCAUAUAUGCACAUGCAUGCUUUAAGUUCACAAACCAAA ----..(((((...(((..(...((((((....))))))....)..))).(((((...(((((.((....)).)))))...)))))......)))))......... ( -25.40) >DroYak_CAF1 9453 89 + 1 AAAUUCUGAACAGCUGUUGGAACAGUGUUGAUAAGGGGCUAAACUAACAACAUGUAAA----------------UGCAUAUGUAUGCUUCAAGUUCACGAUAAA-A ..(((.((((((((((((((...(((.((.....)).)))...))))))((((((...----------------...))))))..)))....))))).)))...-. ( -16.70) >consensus ____GCUGAACAGCUGUUGGAACAGUGUUGAAAAGCGCCCAAACUGACAACAUGUAAAUGCA_UUAUGCAUAUAUGCAUAUGUAUGCUUCAAGUUCACAAACCAAA ......(((((.(.((((((....(((((....))))).....)))))).)........................((((....)))).....)))))......... (-12.35 = -14.13 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:11 2006