Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,758,436 – 4,758,548 |
Length | 112 |
Max. P | 0.671860 |
Location | 4,758,436 – 4,758,548 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.00 |
Mean single sequence MFE | -35.92 |
Consensus MFE | -24.79 |
Energy contribution | -25.02 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.27 |
Mean z-score | -3.02 |
Structure conservation index | 0.69 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4758436 112 + 22224390 ------G--CAGGUGACGAACCUGAACAACCAUAUGAAGUCGCACCACAAGGUGCAGCAGUACUGCUGCAACGUGUGCAACAAGAAGUUCACGCAGGUGACCUCGCUGAACCAGCACCUG ------.--(((((.....)))))...........((.((((((((....)))((((((....))))))...(((((.(((.....))))))))..))))).))((((...))))..... ( -39.00) >DroVir_CAF1 23603 112 + 1 ------G--CAGGUGACCAAUCUGAACAACCACAUGAAGUCGCAUCACAAGGUGCAGCAGUAUUGCUGCAAUGUGUGCAGCAAGAAGUUCACGCAGGUCACCUCAUUGAAUCAACAUCUG ------(--.((((((((....(((((...........((.(((((....))))).))....((((((((.....))))))))...)))))....)))))))))................ ( -38.80) >DroGri_CAF1 1140 114 + 1 ------GAUUAGGUGACCAAUCUGAACAAUCACAUGAAGUCACACCACAAGGUGCAGCAGUAUUGCUGCAACGUUUGCAGCAAGAAGUUCACACAGGUCACCUCCCUGAAUCAGCAUCUG ------((((((((((((....(((((...........((..((((....))))..))....((((((((.....))))))))...)))))....)))))))).....))))........ ( -38.50) >DroWil_CAF1 10919 112 + 1 ------A--CAGGUUACCAACCUCAACAAUCAUAUGAAAUCGCACCACAAGGUCCAACAAUAUUGCUGCAAUGUGUGUAGCAAAAAAUUCACCCAGGUCACCUCGCUGAAUCAGCAUUUG ------.--.((((.(((.......................(.(((....))).).......((((((((.....))))))))............))).)))).((((...))))..... ( -24.20) >DroMoj_CAF1 1067 118 + 1 ACCCUGG--CAGGUGACCAAUCUGAACAAUCACAUGAAGUCGCAUCACAAAGUGCAGCAGUACUGCUGCAACGUGUGCAGCAAGAAGUUCACGCAGGUCACCUCACUGAACCAGCAUCUG ...((((--.((((((((....(((((..((....)).((.(((.(((....(((((((....)))))))..)))))).)).....)))))....)))))))).......))))...... ( -40.60) >DroAna_CAF1 8929 111 + 1 ---------UAGGUGACGAAUCUGAACAAUCAUAUGAAGUCGCACCACAAGGUGCAGCAGUAUUGUUGCAACGUUUGCAACAAGAAGUUCACGCAGGUGACAUCGCUGAACCAACACCUG ---------((((((.......(((((...........((.(((((....))))).))....((((((((.....))))))))...)))))....((((....)))).......)))))) ( -34.40) >consensus ______G__CAGGUGACCAAUCUGAACAAUCACAUGAAGUCGCACCACAAGGUGCAGCAGUAUUGCUGCAACGUGUGCAGCAAGAAGUUCACGCAGGUCACCUCGCUGAACCAGCAUCUG .........((((((.......(((((...........((.(((((....))))).))....((((((((.....))))))))...)))))..((((......).)))......)))))) (-24.79 = -25.02 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:05 2006