Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,748,670 – 4,748,781 |
Length | 111 |
Max. P | 0.705026 |
Location | 4,748,670 – 4,748,781 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 78.40 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -17.26 |
Energy contribution | -18.68 |
Covariance contribution | 1.43 |
Combinations/Pair | 1.41 |
Mean z-score | -1.49 |
Structure conservation index | 0.64 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705026 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4748670 111 - 22224390 -GUC-UUUUCGCCAUUUU---UGCCAACGUUGUAAAGGGCACCAAAAAUAAUUAAGCUGGCAGAGGCAAUAAAAAUGCUUAACAAGCUUAAGGCCGGAAAUUCCCUAAGGAAGGUA -..(-((((((((.....---((((............))))..........(((((((.....(((((.......)))))....)))))))))).((.....))....)))))).. ( -25.90) >DroVir_CAF1 29687 102 - 1 -UCU-CUCCCGCU-UUACAGCCGCACAUAU---------UGGCAAAAAUAAUUAAGCGG-CUGAGGUAAUAAAAAUGCCUAACAAGCUGCU-CCAGGUAGACCGCAUAUGAACGUA -((.-....((.(-((((.((((.......---------))))...........(((((-((.(((((.......)))))....)))))))-....))))).)).....))..... ( -24.20) >DroSec_CAF1 41030 111 - 1 -GUC-UUUUCGCCAUUUU---UGCCCACGUUGUAAAGGGCACCAAAAAUAAUUAAGCUGGCAGAGGCAAUGAAAAUGCUUAACAAGCUUAAGGCCGGAAAUUCCCUAAGGAAGGUA -..(-((((((((.....---(((((..........)))))..........(((((((.....(((((.(....))))))....)))))))))).((.....))....)))))).. ( -29.70) >DroEre_CAF1 46935 112 - 1 -UUCUUUUUUGCCAUUUU---UCCCCACGAUGUAAAGGGCACCAGAAAUAAUUAAGCUGGCAGAGGCAAUAAAAAUGCUUAACAAGCUUAAGGCCGGAAAUUCCCUAUGGAAGGUA -........((((...((---(((...(........)(((...........(((((((.....(((((.......)))))....))))))).))))))))((((....)))))))) ( -24.30) >DroYak_CAF1 43720 111 - 1 -UUC-UUUUCGCCAUUUU---UGCCCACGUUGUAAAGGGCACCGAAAAUAAUUAAGCUGGCAGAGGCAAUAAAAAUGCUUAACAAGCUUAAGGCCGGAAACUCCCUAAGGAAGGUA -..(-((((((((.....---(((((..........)))))..........(((((((.....(((((.......)))))....)))))))))).(....).......)))))).. ( -29.90) >DroAna_CAF1 56516 111 - 1 UCCC-UUUUGGCUUUUUU---U-UUUUGGGGAAAAAGGGCACCAAAAAUAAUUAAGCUGGCAGAGGCAAUAAAAAUGCUUAACAAGCUUAAGGCCGGAAAUUCUCUAAGGAAGGUA ..((-((((((((.....---(-((((((............)))))))...(((((((.....(((((.......)))))....)))))))))))(((.....)))..)))))).. ( -27.40) >consensus _UUC_UUUUCGCCAUUUU___UGCCCACGUUGUAAAGGGCACCAAAAAUAAUUAAGCUGGCAGAGGCAAUAAAAAUGCUUAACAAGCUUAAGGCCGGAAAUUCCCUAAGGAAGGUA .....(((((((((((((...(((((..........)))))...)))))..(((((((.....(((((.......)))))....)))))))))).)))))((((....)))).... (-17.26 = -18.68 + 1.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:02 2006