Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,737,713 – 4,737,833 |
Length | 120 |
Max. P | 0.809228 |
Location | 4,737,713 – 4,737,833 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -31.60 |
Energy contribution | -32.00 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.09 |
Mean z-score | -1.42 |
Structure conservation index | 0.88 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4737713 120 + 22224390 ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCGCAGCCCUC ..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.((.....))..)))).. ( -37.80) >DroSec_CAF1 30578 120 + 1 ACAUAAACAACAGUUACGCUCGAACAACGAGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGACCGAAAGUCGCAGCCCUG ..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......(((..((.....))...))).. ( -35.40) >DroEre_CAF1 34084 120 + 1 ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCGCAGCCCUG ..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.((.....))..)))).. ( -37.80) >DroYak_CAF1 31937 120 + 1 ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGUCCGAAAGUCGCAGCCCUG ..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.((.....))..)))).. ( -36.10) >DroAna_CAF1 34741 116 + 1 ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGUACGGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCUC----UUG ..........(((.(((((((((((..........((((((.......))))))((((((((....)))))))).)))))).))))).))).......(((..(....)..))----).. ( -31.90) >consensus ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCGCAGCCCUG ..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.(....).....)))).. (-31.60 = -32.00 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:59 2006