Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 623,362 – 623,473 |
Length | 111 |
Max. P | 0.500000 |
Location | 623,362 – 623,473 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.31 |
Mean single sequence MFE | -40.65 |
Consensus MFE | -27.99 |
Energy contribution | -29.55 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.51 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 623362 111 - 22224390 GAAACGAAAGCGCCGCCAGAGAUGAGAUGCGC-----GCCUGGCUCGGAUGAC----UGGCUAUCUAGCUGGAAGCGGAUAUCUGGCUCAGACGUCCACUCAAAUGGAGAUGGAGGCAGC ....(....).(((((((((......((.(((-----..(..(((.(((((..----....))))))))..)..))).)).)))))).......(((((((.....))).)))))))... ( -40.20) >DroSec_CAF1 7793 111 - 1 GAAACGAAAGCGCCGCCAGAGAUGAGAUGCGC-----GACUGGCUCGGAUGAC----UGGCUAUCUAGCUGGAAGCGGAUAUCUGGCUCAGACGUCCACUCAAAUGGAGAUGGAGGCAGC ....(....).(((((((((......((.(((-----..(..(((.(((((..----....))))))))..)..))).)).)))))).......(((((((.....))).)))))))... ( -41.10) >DroSim_CAF1 2054 111 - 1 GAAACGAAAGCGCCGCCAGAGAUGAGAUGCGC-----GACUGGCUCGGAUGAC----UGGCUAUCUAGCUGGAAGCGGAUAUCUGGCUCAGACGUCCACUCAAAUGGAGAUGGAGGCAGC ....(....).(((((((((......((.(((-----..(..(((.(((((..----....))))))))..)..))).)).)))))).......(((((((.....))).)))))))... ( -41.10) >DroEre_CAF1 8079 114 - 1 GAAACGAAAGCGCCGCCAGAGAUGAGAUGGGCUUGGAGACCGGCUCGGAUGAGCGAACGGCUAUCUAGCUGGAUACGUUAAUCUGGCCCAGACGUCCACUCA------GAUGCAGGCAGC ....(....).((.(((.(...((((.(((((..(....).(((.(((((.((((..(((((....)))))....)))).)))))))).....)))))))))------....).))).)) ( -40.20) >consensus GAAACGAAAGCGCCGCCAGAGAUGAGAUGCGC_____GACUGGCUCGGAUGAC____UGGCUAUCUAGCUGGAAGCGGAUAUCUGGCUCAGACGUCCACUCAAAUGGAGAUGGAGGCAGC ....(....).(((((((((......((.(((.......((((((.(((((..........)))))))))))..))).)).)))))).......(((((((.....))).)))))))... (-27.99 = -29.55 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:59 2006