Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 42,756 – 42,871 |
Length | 115 |
Max. P | 0.986901 |
Location | 42,756 – 42,871 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.53 |
Mean single sequence MFE | -20.17 |
Consensus MFE | -7.12 |
Energy contribution | -8.18 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.12 |
Mean z-score | -2.33 |
Structure conservation index | 0.35 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.986901 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 42756 115 - 22224390 AAAACAUGUUUACAAAGUUAAAUCUUUAAGAAA---UAAUCCAAAAAGUCAAAAAAUAUGAAUUCUGAUGGAGAACUCUGUGAAUAAAAAA--CUGUAGCCGAAUGGAUUUUAGGACAUC ......((((((((.((((...(((...((((.---............(((.......))).))))...))).)))).)))))))).....--(((...((....))....)))...... ( -15.24) >DroSec_CAF1 29341 117 - 1 AAAACAUGAUUACAAAGUUAAAUCUUUAAGAAA--AAAAUCCAAAAAGUCCAAAAAUAUUAAUAUUGACGGAGAACUCUGUCAAUAAAAACU-UUGGAGCCGAAUGGAUUUUAGGACAUC .....(((.....((((......))))......--....(((..((((((((..........((((((((((....)))))))))).....(-(((....)))))))))))).)))))). ( -24.20) >DroSim_CAF1 29974 117 - 1 AAAACAUGAUUACAAAGUUAAAUCUUUAAGAAA--AAAAUCCAAAAAGUCCAAAAAUAUUAAUAUUGACGGAGAACUCUGUGAAUAAAAACU-UUGGAGCCGAAUGGAUUUUAGGACAUC .....(((.....((((......))))......--....(((..((((((((..........((((.(((((....))))).)))).....(-(((....)))))))))))).)))))). ( -20.10) >DroEre_CAF1 11777 108 - 1 AAAAUAUGGUGACACAGUUAACACUAUAAGAAA--AAAUUCC----AGUCCAAAAAUAUUACC------GGAGAACUCUUUGAAUAAACAUUUUUAGAGCCAAUCGGAUUUUAGGACAUU ....(((((((..........))))))).....--.......----.((((.(((((....((------((....((((..((((....))))..))))....))))))))).))))... ( -21.10) >DroYak_CAF1 23743 92 - 1 AAAAUAUGGUGACACAGUUAAAACCGUAAGAAAAAAAAUUCC----AGUCCAAAAAUGUAAAU---------------AUUGACG---------AAGAGUCAGGUGGAUUUUAGGACAUU ....((((((............))))))..............----.((((.(((((.((...---------------.(((((.---------....))))).)).))))).))))... ( -20.20) >consensus AAAACAUGAUUACAAAGUUAAAUCUUUAAGAAA__AAAAUCCAAAAAGUCCAAAAAUAUUAAU__UGA_GGAGAACUCUGUGAAUAAAAACU_UUGGAGCCGAAUGGAUUUUAGGACAUC ...............................................((((.(((((..........(((((....)))))..................((....))))))).))))... ( -7.12 = -8.18 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:22 2006