Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,732,394 – 4,732,499 |
Length | 105 |
Max. P | 0.593845 |
Location | 4,732,394 – 4,732,499 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.08 |
Mean single sequence MFE | -32.03 |
Consensus MFE | -26.11 |
Energy contribution | -26.24 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.11 |
Mean z-score | -1.52 |
Structure conservation index | 0.82 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4732394 105 + 22224390 GAAAGGCAAA-CGAAAAGAAUAA--AGGAUUUGUGGGCGUU-UAUGGAGGCGUGGCAGACCACUAAUAGCAGCGCCUUGUUGCCACCGCAAAGCAUGCUUUUCGGUUUA ((((((((..-(.....).....--....(((((((..((.-....(((((((.((............)).)))))))...))..)))))))...))))))))...... ( -29.90) >DroSec_CAF1 25397 105 + 1 GAAAGGCAAAACGAAACGAA-AA--AGGAUUUGUGGGCGUU-UAUGGAGGCGUGGCAGACCACUAAUAGCAGCGCCUUGUUGCCACCGCAAAGCAUGCUUUUCGGUUUA ....(((((((((..(((((-..--....)))))...))))-)...(((((((.((............)).)))))))..))))((((.((((....)))).))))... ( -33.50) >DroEre_CAF1 28820 104 + 1 GGGAGAAAAU-CGAAAAGAA-AA--CGGAUUUGUGGGCGUU-UGAGGAGGCGUGGCAGACCACUAAUAGCAGCGCCUUGUUGCCACCGCAAAGCAUGCUUUUCGGUUUA ......((((-(((((((..-..--....(((((((..((.-.((.(((((((.((............)).))))))).))))..))))))).....))))))))))). ( -34.92) >DroYak_CAF1 26602 107 + 1 GAAAGAAUAA-CGAAAAGAA-AAACGGGAUUUGUGGGCGCUGUGAGGAGGCGUGGCAGACCACUAAUAGCAGCGUCUUGUUGCCACCGCAAAGCAUGCUUUUCGGUUUA ..........-(((((((..-...((...(((((((.....(..(.(((((((.((............)).))))))).)..)..)))))))...)))))))))..... ( -29.80) >consensus GAAAGAAAAA_CGAAAAGAA_AA__AGGAUUUGUGGGCGUU_UAAGGAGGCGUGGCAGACCACUAAUAGCAGCGCCUUGUUGCCACCGCAAAGCAUGCUUUUCGGUUUA ...........(((((((...........(((((((..((...((.(((((((.((............)).))))))).))))..))))))).....)))))))..... (-26.11 = -26.24 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:55 2006