Locus 1693

Sequence ID X_DroMel_CAF1
Location 4,717,692 – 4,717,795
Length 103
Max. P 0.596608
window2781

overview

Window 1

Location 4,717,692 – 4,717,795
Length 103
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 77.43
Mean single sequence MFE -30.80
Consensus MFE -16.15
Energy contribution -16.52
Covariance contribution 0.38
Combinations/Pair 1.12
Mean z-score -2.06
Structure conservation index 0.52
SVM decision value 0.13
SVM RNA-class probability 0.596608
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4717692 103 + 22224390
AGCAAUGGCCAGUUAUUAGCUGGCAUUCCAGUUCAGUACGCUUAACUUCGAU---UCGAUUUUGGUUU------------UGGUAUUGGCAUUGGUAUUGGUUUCGGCUAUGGUUUUU
(((....((((((.....))))))...((((((((((((.(..(((((((..---.)))....)))).------------.)))))))).)))))...........)))......... ( -26.50)
>DroSec_CAF1 10643 114 + 1
AGCAAUGGCCAGUUAUUAGCUGGCAGUCCAGUUCAGUACGCUUCACUUCGGU---UCGAUUUUGGUUUUAGUAUUGGUAUUGGUAUUGGCAUUGGUAUUGGUUUCGGCUUCGGUU-UU
(((...(((((((.(((((.((.((((((((((((((((...(((..(((..---.)))...))).....))))))).))))).)))).))))))))))))))...)))......-.. ( -31.60)
>DroEre_CAF1 13156 102 + 1
AGCAAUGGCCAGUUAUUAGCUGGCAGUUCAGUUCAGUCCGCUUCACUUCGGU---GCGAUUUUGGUUUUGGUAUUGGUAUUGG------------UAUUGGCUUCGGCUUCGGUU-UU
..(((((((((((.....))))))...(((((((((((((((.(((....))---).......)))...)).))))).)))))------------)))))((....)).......-.. ( -26.40)
>DroYak_CAF1 11106 99 + 1
AGCAAUGGCCAGUUAUUAGCUGGCAGUCCAGUUCAGUACGCUUCACUUCGGUGAAGCGAUUUUGGUAU------UGGUUUUGG------------UUUGGGCUUCGCUUUUGCUU-UU
(((((..((((((.....))))))(((((((..(((.(((((((((....)))))))(((......))------).)).))).------------.)))))))......))))).-.. ( -38.70)
>consensus
AGCAAUGGCCAGUUAUUAGCUGGCAGUCCAGUUCAGUACGCUUCACUUCGGU___GCGAUUUUGGUUU______UGGUAUUGG____________UAUUGGCUUCGGCUUCGGUU_UU
(((...(((((((((((((((((....)))))).)))).(((.....(((......)))....)))..............................)))))))...)))......... (-16.15 = -16.52 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:47 2006