Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,716,268 – 4,716,379 |
Length | 111 |
Max. P | 0.543374 |
Location | 4,716,268 – 4,716,379 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.20 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -17.77 |
Energy contribution | -18.02 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.14 |
Mean z-score | -1.47 |
Structure conservation index | 0.75 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.543374 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4716268 111 - 22224390 ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAGCCAUUUGUCCGGAAUUGAUAAACACCGUUAAAAAUGGAAAAAA------AAAGUGAAAAAUAAAGCGA .(((............((((..((((((......(((((((....)))))))...)))))).)))).......((((.....))))......------...............))). ( -25.70) >DroSec_CAF1 9251 92 - 1 ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAACCAUUUGUCCGGAAUUGAUAAACACCGUAAAAAGCGCAAAAAA------------------------- .(((...........(((.....)))..((((((((((....))))).....((((((.......))))))...)))))...))).......------------------------- ( -19.20) >DroEre_CAF1 10357 95 - 1 ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAGCCAUUUGUCCGGAAUUGAUAAACACAGUAAAAUGCU---------------------GAA-AAAGCGA .(((............((((..((((((......(((((((....)))))))...)))))).)))).......((((.....)))---------------------)..-...))). ( -26.50) >DroYak_CAF1 10228 116 - 1 ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGUAGCCAUUUGUCCGGAAUUGAUAAACACCGUAAAUAGCGGAAAAAAUCGCAAAAACUGAAGAA-AAAACAA ..((............((((..((((((......(((((........)))))...)))))).)))).......((((.....))))........)).............-....... ( -23.50) >consensus ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAGCCAUUUGUCCGGAAUUGAUAAACACCGUAAAAAGCGGAAAAAA______________GAA_AAAGCGA ................((((..((((((......(((((((....)))))))...)))))).)))).......((((.....))))............................... (-17.77 = -18.02 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:46 2006