Locus 1691

Sequence ID X_DroMel_CAF1
Location 4,713,533 – 4,713,632
Length 99
Max. P 0.587770
window2779

overview

Window 9

Location 4,713,533 – 4,713,632
Length 99
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -23.66
Consensus MFE -12.54
Energy contribution -13.46
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 0.11
SVM RNA-class probability 0.587770
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4713533 99 + 22224390
UACUUGGAAUGAAAGGCU-GUAGGUGGCAAGGAAAUAGGUUU--------GCAGGCAAAAGCAAUUUGCAGUUAAUUAGCAGACUAAGAGCCACAAAAGCCAU--------CUAAA
..............((((-....(((((.........(((((--------((..(((((.....))))).........)))))))....)))))...))))..--------..... ( -23.72)
>DroSec_CAF1 6664 97 + 1
GACUUGGAGUGAAAGGCU-GAAGGUGGCAAGGAAAUAGGU-U--------GCAGGCAAUAGU-CUUUGCAGUUAAUUAGCAGACUAAGAGUCACAAAAGCCAU--------CUAAA
(((((..(((.....(((-((.....(((((((.....((-(--------(....))))..)-))))))......)))))..)))..)))))...........--------..... ( -24.90)
>DroEre_CAF1 7674 95 + 1
GACUUGGAGUGAAAGGCU-GAAGGUGGCAAGGAAAUAG------------GCAGGCAAAAGCAAUUUGCAGUUAAUUAGCAGACUAAGAGGCACAAAAGCCAU--------CUAAA
..(((.......)))...-..(((((((..........------------....(((((.....))))).(((..((((....))))..)))......)))))--------))... ( -18.80)
>DroYak_CAF1 7531 99 + 1
AACAUGAAGUGAAAGCCC-GAAGGUGGCCAGGAAAUGGGUUU--------GCAGGCAAAAGCAAUUUGCAGUUAAUUAGCAGACUAAGAGCCACAAAAGCCAU--------CUAAA
........((....))..-..(((((((..((.....(((((--------((..(((((.....))))).........))))))).....))......)))))--------))... ( -22.20)
>DroAna_CAF1 7076 115 + 1
AAUUUCGAAUGAAAAGCAAAAAGGUGGCAACAAAAUGCCUUUUGCUUUUAGCCGG-AAAAGCAAUUUGCAGUUAAUUAGCAGACUAAGAGCCACAAAAGGCAUCUCUCUCUCUAAA
..(((((....((((((((((....((((......))))))))))))))...)))-))..((.....))......((((.(((...((((((......))).)))...))))))). ( -28.70)
>consensus
AACUUGGAGUGAAAGGCU_GAAGGUGGCAAGGAAAUAGGUUU________GCAGGCAAAAGCAAUUUGCAGUUAAUUAGCAGACUAAGAGCCACAAAAGCCAU________CUAAA
..............((((.....(((((......................((........))..(((((.........)))))......)))))...))))............... (-12.54 = -13.46 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:45 2006