Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 622,967 – 623,082 |
Length | 115 |
Max. P | 0.535369 |
Location | 622,967 – 623,082 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.57 |
Mean single sequence MFE | -34.78 |
Consensus MFE | -24.62 |
Energy contribution | -25.88 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.10 |
Mean z-score | -1.48 |
Structure conservation index | 0.71 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 622967 115 + 22224390 ----UCGCAGAUGGAGUC-UUCUUACCUGGCCCAUCCCGAUGGGCCAGAAGGCCUUAUCACACGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC ----.....((((..(((-((((.....(((((((....))))))))))))))..))))..(((((....))))).(((.((...((((...))))..))..)))............... ( -34.60) >DroSec_CAF1 7364 116 + 1 G---UCGGAGAUGGAGUC-UUCUUACCUUGCCCAUCCUGAUGGGUCAGAGGCCCUUAUCACGCGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC (---((((.(((((.((.-..........))))))))))))(((..((((((........((((((....)))).))...((...((((...))))..))...))))))...)))..... ( -32.10) >DroSim_CAF1 1625 116 + 1 G---UCGGAGAUGGAGUC-UUCUUACCUUGCCCAUCCUGAUGGGUCAGAGGCCCUUAUCACGCGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC (---((((.(((((.((.-..........))))))))))))(((..((((((........((((((....)))).))...((...((((...))))..))...))))))...)))..... ( -32.10) >DroEre_CAF1 7702 115 + 1 GGUGGUGUGGAUGGAGUCCUUCUUACCUGUCCCAUC-----GGGUCGGAAGGCCUUAUCAGGCGGACCCGUCCGUCGCUCUGUUAUCACUUAAUGAACGCCCAGCUUCUAUUCCCAGUCG ((((((((((((((.((((((((.(((((......)-----)))).)))).((((....))))))))))))))).))).......(((.....))).))))................... ( -40.30) >consensus G___UCGGAGAUGGAGUC_UUCUUACCUGGCCCAUCCUGAUGGGUCAGAAGCCCUUAUCACGCGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC ......((.(((((((..........(((((((((....))))))))).............(((((....))))).(((......(((.....)))......)))))))))).))..... (-24.62 = -25.88 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:58 2006