Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,712,455 – 4,712,551 |
Length | 96 |
Max. P | 0.901179 |
Location | 4,712,455 – 4,712,551 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -28.04 |
Consensus MFE | -17.68 |
Energy contribution | -17.36 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.63 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901179 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4712455 96 + 22224390 CC--------------UUAACC-------CAUACCCAG-GGCAC--AGGGCUGGCUGGCUUUUAUGCCCGCAGAUUUGGGUUAAAAGUAGCCUCCCUUGUGUAUUUAAUAGUAUUCCACA ..--------------....((-------(.......)-))(((--((((..(((((.((((((.(((((......))))))))))))))))..)))))))................... ( -32.70) >DroSec_CAF1 5607 89 + 1 CC--------------UUAACC-------CAUACCCUA-G---------CCGGGCUGGCUUUUAUGCCCGCAGAUUUGGGUUAAAAGUAGCCUCCCUUGUGUAUUUAAUAGUAUUCCACA ..--------------......-------.((((.(.(-(---------..((((((.((((((.(((((......)))))))))))))))))..)).).))))................ ( -21.90) >DroEre_CAF1 6552 108 + 1 CCUUAACCCUUAACCCUUAACC-------CAUAC-CA--GGCCC--GUAGCUGGCUGGCUUUUAUGCCCGCAGCUAUGGGUUAAAAGUAGCCUCCCUUGUGUAUUUAAUAGUAUUCCAGG ......................-------.....-..--(((((--(((((((.(.(((......))).)))))))))))))............(((.(.(((((....))))).).))) ( -29.80) >DroYak_CAF1 6404 95 + 1 CC--------------UUAGCC-------CAUACACG--GGCCC--AUGGCUGGCUGGCUUUUAUGCCCGCAGAUUUGGGUUAAAAGUAGCCUCCCUUGUGUAUUUAAUAGUAUUCCAGA ..--------------...(((-------(......)--))).(--(.((..(((((.((((((.(((((......))))))))))))))))..)).))..................... ( -28.70) >DroAna_CAF1 5934 106 + 1 CC--------------UUCGCCGCCACUCCACAGCCACUGCCCCUUAAGGCUGGCUGACUUUUAUGCCCGCAGAUUUGGGUUAAAAGUAGCUUCCCUUGUGUAUUUAAUAGUAUUCCAGA ..--------------......((.......((((((..(((......)))))))))(((((((.(((((......)))))))))))).))....((.(.(((((....))))).).)). ( -27.10) >consensus CC______________UUAACC_______CAUACCCA__GGCCC__AUGGCUGGCUGGCUUUUAUGCCCGCAGAUUUGGGUUAAAAGUAGCCUCCCUUGUGUAUUUAAUAGUAUUCCAGA ....................................................((((.(((((((.(((((......))))))))))))))))............................ (-17.68 = -17.36 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:43 2006