Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,711,507 – 4,711,614 |
Length | 107 |
Max. P | 0.972570 |
Location | 4,711,507 – 4,711,614 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 82.66 |
Mean single sequence MFE | -30.93 |
Consensus MFE | -20.96 |
Energy contribution | -24.40 |
Covariance contribution | 3.44 |
Combinations/Pair | 1.06 |
Mean z-score | -2.60 |
Structure conservation index | 0.68 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4711507 107 + 22224390 UGGUGCAUGCAGGGGAAUUGACAUGCCGCAACUUGGCGGCAAAAGUACACAAUAAAUUUGCAUGCCACAUGCACAUUCGUAUACGAGUAUGUAUGCACUCGGUCUCA ..(.(((((((((...((((((.((((((......))))))...))...))))...)))))))))).((((((.(((((....))))).))))))............ ( -35.10) >DroSec_CAF1 4677 98 + 1 -GUUGCAUGCAGGGGAAUUGACAUGCCGCAACUUGGCGGCAAAAGUACACAAUAAAUUUGCAUGCCACAUGCACAUUCGUAUAGGAGUAUGUAUGCAC--------A -...(((((((((...((((((.((((((......))))))...))...))))...)))))))))..((((((.((((......)))).))))))...--------. ( -32.20) >DroEre_CAF1 5610 97 + 1 -G---CGUGCAGGGGAGUUGACAUGCCGCAACUUGGCGGCAAAAGUACACAAUAAAUUUGCAUGCCACAUGCACACUCGUAU------GUGUAUGCACUCGCUCACA -.---.(((..((.((((.....((((((......))))))..................((((((.((((((......))))------)))))))))))).))))). ( -35.10) >DroYak_CAF1 5544 83 + 1 -G--------AGGGG-AUUGACAUGCCGCAACUUGGCGGCAAAAGUACACAAUAAAUUUGCAUGCCACAUGCACAUUCGUAU------AUGUAUGCACA-------- -.--------.....-.......((((((......)))))).................(((((((...((((......))))------..)))))))..-------- ( -21.30) >consensus _G___CAUGCAGGGGAAUUGACAUGCCGCAACUUGGCGGCAAAAGUACACAAUAAAUUUGCAUGCCACAUGCACAUUCGUAU______AUGUAUGCACU_______A ....(((((((((...((((((.((((((......))))))...))...))))...)))))))))..((((((.((((......)))).))))))............ (-20.96 = -24.40 + 3.44)
Location | 4,711,507 – 4,711,614 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.66 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -21.69 |
Energy contribution | -21.50 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.75 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.905325 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4711507 107 - 22224390 UGAGACCGAGUGCAUACAUACUCGUAUACGAAUGUGCAUGUGGCAUGCAAAUUUAUUGUGUACUUUUGCCGCCAAGUUGCGGCAUGUCAAUUCCCCUGCAUGCACCA .......(.((((((.((.....((((((((...((((((...))))))......))))))))...((((((......))))))............)).))))))). ( -32.50) >DroSec_CAF1 4677 98 - 1 U--------GUGCAUACAUACUCCUAUACGAAUGUGCAUGUGGCAUGCAAAUUUAUUGUGUACUUUUGCCGCCAAGUUGCGGCAUGUCAAUUCCCCUGCAUGCAAC- .--------..((((.((((.((......)).)))).)))).(((((((.....((((...((...((((((......)))))).)))))).....)))))))...- ( -29.00) >DroEre_CAF1 5610 97 - 1 UGUGAGCGAGUGCAUACAC------AUACGAGUGUGCAUGUGGCAUGCAAAUUUAUUGUGUACUUUUGCCGCCAAGUUGCGGCAUGUCAACUCCCCUGCACG---C- .(((((.((((((((((((------(...((((.((((((...)))))).))))..))))))....((((((......)))))))))..))))..)).))).---.- ( -31.70) >DroYak_CAF1 5544 83 - 1 --------UGUGCAUACAU------AUACGAAUGUGCAUGUGGCAUGCAAAUUUAUUGUGUACUUUUGCCGCCAAGUUGCGGCAUGUCAAU-CCCCU--------C- --------((.((((((((------(...((((.((((((...)))))).))))..))))))....((((((......)))))))))))..-.....--------.- ( -22.80) >consensus U_______AGUGCAUACAU______AUACGAAUGUGCAUGUGGCAUGCAAAUUUAUUGUGUACUUUUGCCGCCAAGUUGCGGCAUGUCAAUUCCCCUGCAUG___C_ .........(((((((...........(..(((.((((((...)))))).)))..))))))))...((((((......))))))....................... (-21.69 = -21.50 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:43 2006