Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,711,337 – 4,711,437 |
Length | 100 |
Max. P | 0.721561 |
Location | 4,711,337 – 4,711,437 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -31.00 |
Energy contribution | -31.88 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -1.31 |
Structure conservation index | 0.93 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.721561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4711337 100 - 22224390 CAUUUGUGAGCAGCAGAAUGGCGGUAGCAAUUGGCGGGGGUU-------GGGGGUAUUCAGAUACGGA------------UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG (((((((..((.((..(((.((....)).))).)).......-------...(((((((((((.((..------------..)).)))))))))))...))..)))))))......... ( -27.20) >DroSec_CAF1 4536 99 - 1 CAUUUGUGAGCAGCAGAAUGGCGGUAGCCAUUGGCGGGGGC--------GGCGGCAUUCAGAUACGGA------------UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG (((((((..((.((..((((((....)))))).((....))--------.))(((((((((((.((..------------..)).)))))))))))...))..)))))))......... ( -36.40) >DroEre_CAF1 5469 99 - 1 CAUUUGAGAGCAGCAGGAUGGCGGCAGCGAUUGGCGGG--------CAUGGAGGUAUUCGGACUCGGA------------UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG (((((((((((.((..(((.((....)).))).))..)--------).....((((((((((..((..------------..))..))))))))))....))).))))))......... ( -30.70) >DroYak_CAF1 5383 119 - 1 CAUUUGUGAGCAGCAGGAUGGCACUAGCGAUUGGCGGGGGGCGGAGAAGGAAGGUAUUCGGAUUCGGAUUUGGAUUUGGAUUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG ...((((.....))))((((((((..((.....))......((.(((.....(((((((((((((((((((......)))))))))))))))))))....))).))...)))))))).. ( -39.60) >consensus CAUUUGUGAGCAGCAGAAUGGCGGUAGCGAUUGGCGGGGG_________GGAGGUAUUCAGAUACGGA____________UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG (((((((..((.((..(((.((....)).))).)).................(((((((((((((((((((......)))))))))))))))))))...))..)))))))......... (-31.00 = -31.88 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:41 2006