Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,708,288 – 4,708,405 |
Length | 117 |
Max. P | 0.528525 |
Location | 4,708,288 – 4,708,405 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.85 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -29.42 |
Energy contribution | -30.53 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.06 |
Structure conservation index | 0.82 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4708288 117 + 22224390 AUCUUUGGCUG---CUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUCGACUGCCGCAGAACGGGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAGCCCCAGCCACC .....((((((---((((((.....((((.((....))...))))....((((........)))).))))))...((((...(((((.....)))))......)))).....)))))).. ( -39.30) >DroPse_CAF1 21649 118 + 1 AUCUUUGGCUGCUGCUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUUGACUGCCACAGAACGAGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAACC--AGCGAGC ......(((..(((((((((.....((((.((....))...))))....(((((......))))).))))))..........(((((.....))))).)))..))).....--....... ( -34.00) >DroPer_CAF1 21045 118 + 1 AUCUUUGGCUGCUGCUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUUGACUGCCACAGAACGAGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAACC--AGCGAGC ......(((..(((((((((.....((((.((....))...))))....(((((......))))).))))))..........(((((.....))))).)))..))).....--....... ( -34.00) >consensus AUCUUUGGCUGCUGCUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUUGACUGCCACAGAACGAGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAACC__AGCGAGC ......((((((((((((((.....((((.((....))...))))....(((((......))))).))))))..........(((((.....))))).)))))))).............. (-29.42 = -30.53 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:39 2006