Locus 1683

Sequence ID X_DroMel_CAF1
Location 4,704,801 – 4,704,900
Length 99
Max. P 0.500000
window2768

overview

Window 8

Location 4,704,801 – 4,704,900
Length 99
Sequences 4
Columns 114
Reading direction reverse
Mean pairwise identity 79.78
Mean single sequence MFE -33.85
Consensus MFE -15.73
Energy contribution -16.23
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -2.53
Structure conservation index 0.46
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4704801 99 - 22224390
CGCGAUUGACGUAAUUGUGUGAUACUGGCGAUGGCGUCGAUUUUCGAUUG------------CCUGG-CCAACUUGAUGUUUUCAUUUGG--CGCCAACUAUUACGUAUUUGCA
.((((...(((((((.((.......((((...(((((((.....))).))------------))..(-((((..(((.....))).))))--))))))).)))))))..)))). ( -34.81)
>DroSec_CAF1 57705 111 - 1
CGCGAUUGACGUAAUUGUGUGCCACUGGUGAUGGCGUCGAUAUGCGAUUGUCGAUUGGGCUGGCUGG-CCACCUUGAUGUUUUCAUUUGG--CGCCAACUAUUACGUAUUUGCA
.((((...(((((((.((((((((..(((((..(((((((((......))))....(((.(((....-)))))).)))))..))))))))--)))..)).)))))))..)))). ( -41.80)
>DroEre_CAF1 59184 99 - 1
CGCGAUUGACGUAAUUGUGUGAUACUGGCAAUGGCAUCGAUUGUCGAUUG------------GCUGGCCCACCUCGAUGUUUCCAUUUGG--CGCC-ACUAUUACGUAUUUGCA
.((((...(((((((.((........(.((((((((.....)))).))))------------.).((((((....((((....)))))))--.)))-)).)))))))..)))). ( -29.20)
>DroYak_CAF1 55994 91 - 1
CGCGAUUGACGUAAUUGUGUGAUAUUCGCGAUGGCG---A-UGGCGAU-----------------GG-CCAACUUGAUGUUUUCAUUUGUUUGGCC-ACUAUUAUGUAUUUGCA
.((((...(((((((.((.......((((.((....---)-).)))).-----------------((-((((...((((....))))...))))))-)).)))))))..)))). ( -29.60)
>consensus
CGCGAUUGACGUAAUUGUGUGAUACUGGCGAUGGCGUCGAUUGGCGAUUG____________GCUGG_CCAACUUGAUGUUUUCAUUUGG__CGCC_ACUAUUACGUAUUUGCA
.((((...(((((((.(((((...........((((((((.................................))))))))...........)))..)).)))))))..)))). (-15.73 = -16.23 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:35 2006