Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,703,303 – 4,703,419 |
Length | 116 |
Max. P | 0.578948 |
Location | 4,703,303 – 4,703,419 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -19.04 |
Energy contribution | -19.35 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.73 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4703303 116 + 22224390 ACAUCAAACUCUGCCAGACUGCACCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUUUCCGCC----CAACGAACACACACCCGUACCCA ...........(((..(((((...))))))))((((.......))))....((..(((((...((((....(((....)))))))....))))----)..)).................. ( -24.90) >DroSec_CAF1 56273 100 + 1 ACAUCAAACUCAGCCAGACUGCACCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUUUCCGCC----CACCGCC---------------- ............((.....((((.....))))((((.......)))).....)).(((((...((((....(((....)))))))....))))----)......---------------- ( -23.90) >DroEre_CAF1 57675 101 + 1 ACAUCA-ACUCUGGCAGACUGCAGCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGUGCCCGGGAACUUUCCCGCUU-CCCGCU-UCCCGCUUUC---------------- ......-.....(((.(((((...)))))((.((((.......)))).....((.((((((...))))))((((....))))))..-...)).-....)))...---------------- ( -29.20) >DroYak_CAF1 54493 103 + 1 ACAUCA-ACUCUGCCACACUGCAGCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUACCCGCUUUUCCGCUUUC---------------- ....((-(((((((......)))).)))))..((((.......)))).....((..(((((...)))))..(((....))).))......((......))....---------------- ( -26.40) >consensus ACAUCA_ACUCUGCCAGACUGCACCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUUCCCGCC____CACCGUC________________ ..........((((.....((((.....))))((((.......)))).....))))(((((...)))))..(((....))).((......))............................ (-19.04 = -19.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:30 2006