Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 621,805 – 621,913 |
Length | 108 |
Max. P | 0.723002 |
Location | 621,805 – 621,913 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 73.27 |
Mean single sequence MFE | -45.60 |
Consensus MFE | -24.99 |
Energy contribution | -26.43 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.83 |
Structure conservation index | 0.55 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.723002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 621805 108 - 22224390 GCUCCUACCGUAAGUGCUCCGAAAUAUGAGUUUCGCGACUGGCCACCGGCGCCCGGGAGCUCCAAGUUGUGUAACU--CUGCAGCGGA---------AAGCCCUAGUCGGUGGCCAGCA (((.((((((..((.((((((......(((((.((((((((((..((((...))))..)))...))))))).))))--).....))))---------..)).))...))))))..))). ( -43.80) >DroSec_CAF1 6088 110 - 1 GCUCCUACCGUAAGUGCUCCGAAAUAUGAGUUUCGCGACUGGCUACCGGCGCCCGGGAGCUCCAAGUUGUGUAACUAACUAACUCUCA---------AUGCCCUGGGCGGUGGCCAGCA ........(((....((((........))))...))).(((((((((...(((((((.((....(((((.((.....)))))))....---------..)))))))))))))))))).. ( -40.10) >DroEre_CAF1 6457 117 - 1 GCUCCAACCGUAAGUGCUCCGAAAUGCGGAAUUCGAGCCUGGCCACAGGCGCCUGGGUGCUGCAAGUUGUGCAAUC--UUGCGGUGGACGAGUCUGCGGACAGUGGACGGUGGCCAGGA ..(((.(((((((((((..(((..(((((.(((((.(((((....)))))...))))).)))))..))).)))..)--)))))))((.((.(((..(.....)..)))..)).)).))) ( -47.70) >DroYak_CAF1 5233 98 - 1 GCUCCUACCGUAAGUGCUCCGAAAUGCGGAAUUCCAGCCUGGCCACCGGCGCCCGGGUGCUCCAGGUUAUGUAAGC--CUGCUGG-------------------GGCCGGUGGCCAGGA .......(((((..(......)..)))))........(((((((((((((.(((((......((((((.....)))--)))))))-------------------)))))))))))))). ( -50.80) >consensus GCUCCUACCGUAAGUGCUCCGAAAUACGAAAUUCGAGACUGGCCACCGGCGCCCGGGAGCUCCAAGUUGUGUAACC__CUGCAGCGGA_________A_GCCCUGGACGGUGGCCAGCA ...................((((((....))))))..(((((((((((((((....))))..........(((......))).........................))))))))))). (-24.99 = -26.43 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:56 2006