Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,698,608 – 4,698,709 |
Length | 101 |
Max. P | 0.528360 |
Location | 4,698,608 – 4,698,709 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 84.72 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -25.59 |
Energy contribution | -25.70 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.81 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.528360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4698608 101 - 22224390 AAGGACAGCCCGCUGGGCCAUAAAUCCUAAUUGGCUCAAGUGGCUCGGCAGGCCUGCAAUUGGGAUUCCUUUCCACUGCCGCCCCCCGCUGCCCUAAUGCC .(((.((((..((((((((((....((.....)).....)))))))))).(((..(((..(((((.....))))).))).)))....)))).)))...... ( -39.40) >DroSec_CAF1 51880 86 - 1 AAGGACAGCCCGCUGGGCCAUAAAUCCUAAUUGGCUCAAGUGGCUCGGCAGGCCUGCAAUUGGGAUUCCUUGCCACUGCC---CCCCGC------------ ..((...(((.((((((((((....((.....)).....)))))))))).)))..(((..(((.(.....).))).))).---..))..------------ ( -30.60) >DroEre_CAF1 53130 84 - 1 AAGGACAGCCCGCUGGGUCAUAAAUCCUAAUUGGCUCAAGUGGCACGGCAGGCCUGCAAUUGGGAUUCCUUGUCACUUC-----CCCGC------------ ..((..((((...((((........))))...)))).((((((((.((....(((......)))...)).)))))))).-----.))..------------ ( -24.90) >consensus AAGGACAGCCCGCUGGGCCAUAAAUCCUAAUUGGCUCAAGUGGCUCGGCAGGCCUGCAAUUGGGAUUCCUUGCCACUGCC___CCCCGC____________ (((((...(((((((((((((....((.....)).....))))))))))..(....)....)))..))))).............................. (-25.59 = -25.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:26 2006