Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,694,612 – 4,694,704 |
Length | 92 |
Max. P | 0.882858 |
Location | 4,694,612 – 4,694,704 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.26 |
Mean single sequence MFE | -20.54 |
Consensus MFE | -16.40 |
Energy contribution | -17.15 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.80 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882858 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4694612 92 - 22224390 GUUAGUGCUUCUCCACUUUUACAGCGUUCUUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA .(((((((..............((((........))))....((((((((((...(((((......)))))..)))).))))))))))))). ( -23.10) >DroSec_CAF1 47991 92 - 1 GUUAGUGCUCCUCCACUUUUACAGCGUUCUUCCUCACUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA .((((((((..............(((..............)))(((((((((...(((((......)))))..)))).))))))))))))). ( -19.24) >DroEre_CAF1 48502 83 - 1 GUUAGUGAACCUCCACUUUC---------UUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA .((((((..((.........---------......((....))(((((((((...(((((......)))))..)))).))))))))))))). ( -16.70) >DroYak_CAF1 45464 89 - 1 GUUAGUGCUCCUCAACUUUUACAGCG---UUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA .(((((((..............((((---.....))))....((((((((((...(((((......)))))..)))).))))))))))))). ( -23.10) >consensus GUUAGUGCUCCUCCACUUUUACAGCG___UUCCUCGCUUUUGCGUUGACAUUUAAUGUAAUAAUUUUUACGAUGAUGCUCGACGGCAUUAAA .((((((((..........................((....))(((((((((...(((((......)))))..)))).))))))))))))). (-16.40 = -17.15 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:24 2006