Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,692,972 – 4,693,062 |
Length | 90 |
Max. P | 0.974449 |
Location | 4,692,972 – 4,693,062 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 99.56 |
Mean single sequence MFE | -16.81 |
Consensus MFE | -16.09 |
Energy contribution | -16.29 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.96 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4692972 90 + 22224390 ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU .(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25) >DroSec_CAF1 46392 90 + 1 ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU .(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25) >DroSim_CAF1 19509 90 + 1 ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU .(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25) >DroEre_CAF1 46827 90 + 1 ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU .(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25) >DroYak_CAF1 43771 90 + 1 ACAGACAAAACCAAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU ...(((.........(((((......))))).(((((................................))))).....)))........ ( -15.05) >consensus ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU .(((((((...(((......)))..)))))))(((((................................))))).((.......)).... (-16.09 = -16.29 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:23 2006