Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,691,832 – 4,691,945 |
Length | 113 |
Max. P | 0.654540 |
Location | 4,691,832 – 4,691,945 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.35 |
Mean single sequence MFE | -22.20 |
Consensus MFE | -17.04 |
Energy contribution | -17.76 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.19 |
Mean z-score | -1.63 |
Structure conservation index | 0.77 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654540 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4691832 113 + 22224390 UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA----AAUACGAUUUCACU---GCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUACACUAAUACCA ..............(((((((((.....((((....)))).....----.............(---(((..((((..((((....))))..))))..))))))))))))).......... ( -24.80) >DroSec_CAF1 45285 116 + 1 UUCAACUGCCCUAAGUAAUUAAGCAACAUUGCGAAUGCAUACUUA----AAUACGAACUCACUGCUGCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUAUACUAAUACCA ..............(((((((((((....(((....)))......----.....(....)..)))((((..((((..((((....))))..))))..)))).)))))))).......... ( -22.10) >DroSim_CAF1 18377 116 + 1 UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA----AAUACGAACUCACUGCUGCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUACACUAAUACCA ..............(((((((((((...((((....)))).....----.....(....)..)))((((..((((..((((....))))..))))..)))).)))))))).......... ( -25.60) >DroEre_CAF1 45679 117 + 1 AUAAACUGCCCUUAGUAAUAAGGCAACAAUGCGAAUGCAUAUUUAAUUUAAUACGACUUCACU---GCAACGGUUUAGCAAUUAUUCGUUGAAGUAGUGCAUUUAAUCACACUAAUUCCA ......((((.(((....))))))).......((((((((..............(....)(((---.((((((...(....)...)))))).))).))))))))................ ( -21.70) >DroYak_CAF1 42610 110 + 1 UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA----AAUACGACUCCA------CAACGGUUUGGAAAUUAUUUGUUGAACUAGUUCACUUAAUUACACUAAUUCCA ..............(((((((((.((((((((....)))).....----........((((------........)))).......))))(((....))).))))))))).......... ( -16.80) >consensus UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA____AAUACGAAUUCACU___GCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUACACUAAUACCA ..............(((((((((.....((((....))))..........................(((..((((((((((....))))))))))..))).))))))))).......... (-17.04 = -17.76 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:20 2006