Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,691,057 – 4,691,165 |
Length | 108 |
Max. P | 0.663235 |
Location | 4,691,057 – 4,691,165 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 83.80 |
Mean single sequence MFE | -25.13 |
Consensus MFE | -23.27 |
Energy contribution | -22.83 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -0.85 |
Structure conservation index | 0.93 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.663235 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4691057 108 - 22224390 GUUACCCUCCUCCCACUCCCUUUGCCCACUUUUUGUGCUAUGAUAAGAAUCUGGAAACUUUCACGGGACAACGUGUCGUAUGCGCAGUGUCCUGGCCAAAGUUUUAAC ...................(((((.(((....((((((((((((..(((...(....).)))(((......))))))))).)))))).....))).)))))....... ( -25.40) >DroSim_CAF1 17615 102 - 1 GCUUCCC---UCCCACUCCC---GCCCGCUUUUUGUGCUAUGAUAAGAAUCUGGAAACUUUCACGGGACAACGUGUCGUAUGCGCAAUGUCCUGGCCAAAGUUUUAAC .......---....(((...---(((.(....((((((((((((..(((...(....).)))(((......))))))))).))))))....).)))...)))...... ( -22.90) >DroYak_CAF1 41842 93 - 1 ---------------CGCCCCCUGCCCACUUUUUGUGCUAUCAUAAGAAUCUGGAAACUUUGACGGGACGACGUGUCGUAUGCGCAAUGUCCUGGCCAAAGUUUUAAC ---------------..........(((.((((((((....))))))))..)))((((((((.(((((((..((((.....))))..)))))))..)))))))).... ( -27.10) >consensus G_U_CCC___UCCCACUCCC__UGCCCACUUUUUGUGCUAUGAUAAGAAUCUGGAAACUUUCACGGGACAACGUGUCGUAUGCGCAAUGUCCUGGCCAAAGUUUUAAC .........................(((.(((((((......)))))))..)))(((((((..(((((((..((((.....))))..)))))))...))))))).... (-23.27 = -22.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:19 2006