Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,688,860 – 4,688,956 |
Length | 96 |
Max. P | 0.818517 |
Location | 4,688,860 – 4,688,956 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.83 |
Mean single sequence MFE | -20.75 |
Consensus MFE | -14.68 |
Energy contribution | -15.55 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.11 |
Mean z-score | -1.92 |
Structure conservation index | 0.71 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4688860 96 + 22224390 CUGAAAAAAAAAGAAAAAAAAGUU-GGGCACAAAA--AAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU .....................(((-((........--....))))).........((((((.((..(((........)))..)).))))))........ ( -16.70) >DroSim_CAF1 14418 92 + 1 CUUAAAAAAAG------AAAGUGU-GGGCACAAAAAUAAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ...........------...((((-((((...........)))..))))).....((((((.((..(((........)))..)).))))))........ ( -20.90) >DroEre_CAF1 42745 89 + 1 CUUGGAAAAA-------AAAGUGUUGGGGG-GUAA--AAACCCAACACGCAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ..........-------...((((((((..-....--...)))))))).......((((((.((..(((........)))..)).))))))........ ( -25.60) >DroYak_CAF1 39560 86 + 1 UUUUUGGCAA-------AAAGUGU---GGG-AUAA--AAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ....((((..-------...((((---(((-....--....))..))))).....((((((.((..(((........)))..)).)))))).))))... ( -19.80) >consensus CUUAAAAAAA_______AAAGUGU_GGGCA_AAAA__AAAGCCAACACACAGAGAGACAUUUGCAAGUUGAUUUAUAAGCGCGCUGAUGUCAGUUACGU ....................((((..(((...........)))...)))).....((((((.((..(((........)))..)).))))))........ (-14.68 = -15.55 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:18 2006