Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,685,899 – 4,686,019 |
Length | 120 |
Max. P | 0.515044 |
Location | 4,685,899 – 4,686,019 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.17 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -32.38 |
Energy contribution | -33.38 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.09 |
Mean z-score | -1.65 |
Structure conservation index | 0.79 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4685899 120 + 22224390 UACGAUGGCCAUAAGCGAUUUUGGGUAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCCGGCGGUCGCUCUUUAGUGCGGGGAAAAACCGUUGGGGAAA ..((((((((.....(..((((((....))))))..)...........(((.((.....)).)))...))))).)))(((((((((..((((.......))))....))))))))).... ( -39.60) >DroSec_CAF1 39511 119 + 1 UACGAUGGCCAUAAGCGAUUUUGGGUAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGGCGGCCGCUCUUUAGUGCGGGGAA-AACCGUUGGGGAAA ..((((((((....(((.....(((..((((...((......)).....((((((((((.(.......).)).)))))))).))))..))).....)))..))..-..))))))...... ( -39.60) >DroEre_CAF1 39899 119 + 1 UACGAUGGCCAUAAGCGAUUUUCGGCAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGGCGGCUGCUCUUUAGUGCGGGGAA-AAUCGUUGGGGAAA ........((...((((((((((((((((((...((......)).....((((((((((.(.......).)).)))))))).))))))))(((......))))))-)))))))..))... ( -44.50) >DroYak_CAF1 36748 115 + 1 UACGUUGGCCACAAGCGAUGUUGGGUGGCCGAAAGAGAGAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGUC----GCUCUUUAGUGCGGGGAA-AACCGUUGGGGAAA ....((((((((.(((...)))..))))))))..........((..((((..(((((((((((.((..(((.....)))))))----)))))))...))((....-..))))))..)).. ( -40.30) >consensus UACGAUGGCCAUAAGCGAUUUUGGGUAGCCGAAAGAGAAAAAUCAACAGCUGGCGAAGAGCGAGCCAAGGUCGUUCGCCGGGCGGCCGCUCUUUAGUGCGGGGAA_AACCGUUGGGGAAA ..((((((((....(((.....((((.((((...((......)).....((((((((((.(.......).)).)))))))).)))).)))).....)))..)).....))))))...... (-32.38 = -33.38 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:12 2006