Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,685,393 – 4,685,510 |
Length | 117 |
Max. P | 0.706003 |
Location | 4,685,393 – 4,685,510 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -26.08 |
Energy contribution | -26.82 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.85 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4685393 117 + 22224390 AGUUAAAGUGUCAGUUGUAGCUUGUCAAAACUU---GUGUUGUCCAAUUAGCAUAAUUUCUUGUCUCAACUUCGGCCCCGAUGCAACAGAUACGUAAUUCGGAUACGAAAGUAUCUACGA .......(((((.((((((....(.(((((.((---((((((......)))))))).)).))).)......(((....))))))))).))))).......((((((....)))))).... ( -30.50) >DroSec_CAF1 39017 117 + 1 AGUUUAAGUGUCAGUUGUAGCUUGUCAAAACUU---GUGUUGUCCAAUUAGCAUAAUUUCUUGUCUCAACUUCGGCCCCGAUGCAACAGAUACGUAAUUCGGAUACGAAAGUAUCUACGA .......(((((.((((((....(.(((((.((---((((((......)))))))).)).))).)......(((....))))))))).))))).......((((((....)))))).... ( -30.50) >DroEre_CAF1 39410 117 + 1 AGUUAAAGUGUCAGUUGUAGCUUGUCAAAACUU---GUGUUGUCCAAUUAGCAUAAUUUCUUGUCUCAACUUUGGCUCUGACGCAACAGAUACGUAAUUCGGAUACGAAAGUAUCUACGA .......(((((.(((((..(..((((((..((---((((((......))))))))......((....))))))))...)..))))).))))).......((((((....)))))).... ( -30.20) >DroYak_CAF1 36259 120 + 1 AGUUAAAGUGUCAGUUGUAGCUUGUCAAAACUUGUUGUGUUGUCCAAUUAGCAUAAUUUCUUGUCUCAACUUUGGCCCCGAUGCAACAGAUACGCAAUUCGGAUACGAAAGUAUCUACGA .......(((((.((((((....((((((((..(((((((((......))))))))).....))......)))))).....)))))).))))).......((((((....)))))).... ( -31.50) >consensus AGUUAAAGUGUCAGUUGUAGCUUGUCAAAACUU___GUGUUGUCCAAUUAGCAUAAUUUCUUGUCUCAACUUCGGCCCCGAUGCAACAGAUACGUAAUUCGGAUACGAAAGUAUCUACGA .......(((((.((((((....((((((.......((((((......))))))........((....)))))))).....)))))).))))).......((((((....)))))).... (-26.08 = -26.82 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:11 2006