Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,684,302 – 4,684,419 |
Length | 117 |
Max. P | 0.695650 |
Location | 4,684,302 – 4,684,419 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 85.27 |
Mean single sequence MFE | -29.66 |
Consensus MFE | -22.15 |
Energy contribution | -22.15 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.17 |
Mean z-score | -2.06 |
Structure conservation index | 0.75 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695650 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4684302 117 - 22224390 GAUGGCUCAGCUUGGCUGAGCU-GCAGAAUGCAGCCGAGGAGAAAGCGGGAAGAAAGCCGGUUGGAAAACGGGUGAAAAUCGUAGGAAAAUCGGGGGAAAAUCGAGGAAAACGUGAUG ...((((((((...))))))))-((.....))..((((.......((((.......(((.(((....))).))).....)))).......))))......((((.(.....).)))). ( -32.24) >DroSec_CAF1 37955 118 - 1 GAUGGCUCAGCUUGGCUGAGCUGGCAGGAUGCAGUCGAGGAGAAGGCGGGUAGAAAGCCGGUUGAAAAACGGGUGAAAAUCGUAGGAAAAUCGGGGGAAAAUCGAGGAAAACGUGAUG (..((((((((...))))))))..)..(((.(..((((.......((((.......(((.(((....))).))).....)))).......))))..)...)))............... ( -31.64) >DroEre_CAF1 38345 111 - 1 GAUGGCUCAGCUUGGCU-------CAGGAUGCAGCCGAGGGAAAAGCCGGUUGAAAAUCGGGUGAAAAUCGUAGGAAAACCGUAGGAAAAUCGAGGGGAAAUCGAGGAAAACGUGAUG ..(((((...(((((((-------(.....).))))))).....))))).......((((.((.....((.((((....)).)).))...((((.......)))).....)).)))). ( -25.10) >consensus GAUGGCUCAGCUUGGCUGAGCU_GCAGGAUGCAGCCGAGGAGAAAGCGGGUAGAAAGCCGGUUGAAAAACGGGUGAAAAUCGUAGGAAAAUCGGGGGAAAAUCGAGGAAAACGUGAUG (((..(((..((((((((.............))))))))......((((.......(((.(((....))).))).....))))...........)))...)))............... (-22.15 = -22.15 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:06 2006