Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,682,595 – 4,682,700 |
Length | 105 |
Max. P | 0.944749 |
Location | 4,682,595 – 4,682,700 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.33 |
Mean single sequence MFE | -39.17 |
Consensus MFE | -30.39 |
Energy contribution | -30.20 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -2.85 |
Structure conservation index | 0.78 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.944749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4682595 105 - 22224390 CUCAACGACCCGGAAAAAGG---AGGCGGGGCCACGCCCCUGCCACAAGGCAAGUGCAAACAUAAAUA------------UACAGCUGCAGAAAUGUGCUGGCUGUCUUCAGUUUUUCCU ...........(((((((((---(((((((((...)))))((((....))))................------------..((((.(((....)))))))...))))))..))))))). ( -36.40) >DroSec_CAF1 36249 104 - 1 CUCAACGACCCGGAA-AAGG---AGGCGGGGCCACGCCCCUGCCACAAGGCAAGUGCAAACAUAAAUA------------UACAGCUGCAGAAAUGUGCUGGCUGUCUCCAGUUUUUCCU ...........((((-((((---(((((((((...)))))((((....))))................------------..((((.(((....)))))))...))))))...)))))). ( -38.00) >DroEre_CAF1 36546 103 - 1 CUCAACGACCCGGAA-AAGG---GGGCGGGGCCACGCCCCUGCCACAAGACAAGUGCAAACAUAAAUA------------UACAGCUGCAGAAAUGUGCUGGCUGUC-UCAGUUUUUCCU ...........((((-((((---(((((......)))))))......(((((.((....)).......------------..((((.(((....)))))))..))))-)....)))))). ( -34.60) >DroYak_CAF1 33374 119 - 1 CUCAACGAUCCGGAA-AAGGAGGAGGCGGGGCCACGCCCCUGCCACAAGGCAAGUGCAAACAUAAAUACGAGUAUACUCGUACAGCUGCAGAAAUGUGCUGGCUGUCCUCAGUUUUUCCU ...........((((-((.(((((((((((((...))))).)))....(((...............((((((....))))))((((.(((....)))))))))).)))))...)))))). ( -47.70) >consensus CUCAACGACCCGGAA_AAGG___AGGCGGGGCCACGCCCCUGCCACAAGGCAAGUGCAAACAUAAAUA____________UACAGCUGCAGAAAUGUGCUGGCUGUCUUCAGUUUUUCCU ...........((((.........((((((((...))))).)))....((((.((....)).....................((((.(((....)))))))..))))........)))). (-30.39 = -30.20 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:05 2006