Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,673,103 – 4,673,221 |
Length | 118 |
Max. P | 0.991511 |
Location | 4,673,103 – 4,673,221 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 98.31 |
Mean single sequence MFE | -42.67 |
Consensus MFE | -42.09 |
Energy contribution | -41.87 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -3.43 |
Structure conservation index | 0.99 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4673103 118 + 22224390 CCGUCUCCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAAGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA ..((((((((.(((((.(.(((((((...(((((........))))).)))))))....).)).)))....((.(((((..(((((......)))))..)))))..)))))).)))). ( -43.20) >DroSec_CAF1 34135 118 + 1 CCGUCUUCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAUGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA ..((((((...(((((.(((((((((...(((((........))))).)))))))...)).)).)))....((.(((((..(((((......)))))..)))))..))...)))))). ( -41.60) >DroEre_CAF1 34531 118 + 1 UCGUCUCCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAAGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA ..((((((((.(((((.(.(((((((...(((((........))))).)))))))....).)).)))....((.(((((..(((((......)))))..)))))..)))))).)))). ( -43.20) >consensus CCGUCUCCAUACGUGUGCGUGCUCCAAAAUCGAGAAACAUCCCUUGGGUGGGGCAACAAGGACAACGAUGAGGACACAUAAAGGCUAAAUUGAGCUUGAAUGUGCGCCAUGGAAGACA ..((((((((.(((((.(.(((((((...(((((........))))).)))))))....).)).)))....((.(((((..(((((......)))))..)))))..)))))).)))). (-42.09 = -41.87 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:02 2006