Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,671,491 – 4,671,605 |
Length | 114 |
Max. P | 0.541990 |
Location | 4,671,491 – 4,671,605 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.18 |
Mean single sequence MFE | -44.90 |
Consensus MFE | -32.61 |
Energy contribution | -34.05 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.17 |
Mean z-score | -1.44 |
Structure conservation index | 0.73 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4671491 114 - 22224390 GUCCUGCAGACCAUCACCAAAAUGGGCAGGUGAUAGGUUAACAUUUGGUGGCAUGGCGGCAGGUCCAACUGCGGUGCCGUAAGGUCACCUUG------GGACACGGAGCUCCAAUUCAGC (((((...((((((((((..........)))))).)))).......((((((...((((((...((......))))))))...))))))..)------))))..((....))........ ( -42.70) >DroSec_CAF1 32475 120 - 1 GUCCUGCAGACCAUCACCAAAAUGGGCAGGUGAUUGGUCAAUCCUUGAUGGCAGGGCGGCAGGUCCAACUGCGGUGCCGUAAGGUCGCUCCGAGUAAGGCACUCGGAGCUCCAGUUCAGC (((((((.((((((((((..........))))).))))).(((...))).))))))).((((......))))((.(((....))).(((((((((.....))))))))).))........ ( -54.60) >DroEre_CAF1 32948 114 - 1 GUCCUGCAGACCAUCACCAAAACGGGCAGGUGAAAGGUCAAUCCUUGGUGGCAGGGCGGCAGGUCCAACUGCGGUGCCAUUAGGUCGAUUCG------GGAAUCGGUGCUCCAAUUCAGC .(((((..((((.(((((..........)))))..))))(((((((((((((...((.((((......)))).)))))))))))..))))))------)))...((....))........ ( -39.10) >DroYak_CAF1 29743 114 - 1 GUCCUGCAGACCAUCACCAACACGGGCAGGUGAUAGCUCAAUCCUUGGUGGCAGGGCGGCAGGUCCAACUGCGGUUCCAUAAGGUCGAUGCG------GGAAUCGGAGCUCCAGUUCAGC .(((((((((((.(((((((...((((........)))).....)))))))..((((.((((......)))).)))).....))))..))))------)))....((((....))))... ( -43.20) >consensus GUCCUGCAGACCAUCACCAAAACGGGCAGGUGAUAGGUCAAUCCUUGGUGGCAGGGCGGCAGGUCCAACUGCGGUGCCAUAAGGUCGAUUCG______GGAAUCGGAGCUCCAAUUCAGC (((((((.((((((((((..........)))))).)))).((.....)).))))))).((((......))))((((((....)).))))..........((((.((....)).))))... (-32.61 = -34.05 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:57 2006