Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,668,484 – 4,668,600 |
Length | 116 |
Max. P | 0.620032 |
Location | 4,668,484 – 4,668,600 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -26.25 |
Consensus MFE | -21.36 |
Energy contribution | -21.92 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -1.80 |
Structure conservation index | 0.81 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.620032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4668484 116 + 22224390 UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU----ACAUCAGUGAGCAAGCACUCACACGAACACCGCAGUACACACACACAUACACAUGC .(((....)...........((((((.(((((((((((.(((.............))).)----))....(((((......))))).)))....))))))))))).............)) ( -26.22) >DroSec_CAF1 29765 116 + 1 UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU----ACAUCAGUGAGCUAGCACUCAUACAACCACCGCACUACACACACACAUACACAUGC .(((....)...........(((((((.((((..(((......((..(((((....))))----)..)).(((((......)))))...)))..))))))))))).............)) ( -24.90) >DroEre_CAF1 30538 114 + 1 UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU----ACAUCAGUGAGCAAACACUCACACAACCACCGCAGUACACA--CACAUACACAUGC .(((....)...........((((((.(((((..(((......((..(((((....))))----)..)).(((((......)))))...)))..)))))))))))--...........)) ( -27.10) >DroYak_CAF1 27057 118 + 1 UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAUAUGUACAUCAGCGAGCAAACACUCACACAACCACCGCAGUACACA--CACAUACACAUGC .(((....)...........((((((.(((((..(((..(((.((..((((((......))))))..))...(((......))).))).)))..)))))))))))--...........)) ( -26.80) >consensus UGCGGGAACAACAAUAAACUUGUGUAGCUGCGUCGGUAAGUGGGAAUUAUAUAAACAUAU____ACAUCAGUGAGCAAACACUCACACAACCACCGCAGUACACA__CACAUACACAUGC .(((....)...........((((((.(((((..(((..(((.............)))............(((((......)))))...)))..))))))))))).............)) (-21.36 = -21.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:54 2006